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Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis

View ORCID ProfileNatalia G. Herrera, View ORCID ProfileNicholas C. Morano, View ORCID ProfileAlev Celikgil, George I. Georgiev, Ryan J. Malonis, James H. Lee, Karen Tong, Olivia Vergnolle, Aldo B. Massimi, View ORCID ProfileLaura Y. Yen, View ORCID ProfileAlex J. Noble, View ORCID ProfileMykhailo Kopylov, View ORCID ProfileJeffrey B. Bonanno, Sarah C. Garrett-Thomson, View ORCID ProfileDavid B. Hayes, View ORCID ProfileRobert H. Bortz III, View ORCID ProfileAriel S. Wirchnianski, View ORCID ProfileCatalina Florez, Ethan Laudermilch, View ORCID ProfileDenise Haslwanter, J. Maximilian Fels, M. Eugenia Dieterle, View ORCID ProfileRohit K. Jangra, View ORCID ProfileJason Barnhill, Amanda Mengotto, Duncan Kimmel, Johanna P. Daily, Liise-anne Pirofski, Kartik Chandran, View ORCID ProfileMichael Brenowitz, View ORCID ProfileScott J. Garforth, View ORCID ProfileEdward T. Eng, View ORCID ProfileJonathan R. Lai, View ORCID ProfileSteven C. Almo
doi: https://doi.org/10.1101/2020.06.14.150607
Natalia G. Herrera
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Nicholas C. Morano
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Alev Celikgil
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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George I. Georgiev
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Ryan J. Malonis
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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James H. Lee
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Karen Tong
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Olivia Vergnolle
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Aldo B. Massimi
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Laura Y. Yen
2National Resource for Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY, 10027, USA
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Alex J. Noble
2National Resource for Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY, 10027, USA
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Mykhailo Kopylov
2National Resource for Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY, 10027, USA
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Jeffrey B. Bonanno
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Sarah C. Garrett-Thomson
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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David B. Hayes
3Intl Solidarity of Scientists LLC, 9 Chuck Wagon Ln, Danbury, CT 06810, USA
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Robert H. Bortz III
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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Ariel S. Wirchnianski
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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  • ORCID record for Ariel S. Wirchnianski
Catalina Florez
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
5Department of Chemistry and Life Science, United States Military Academy at West Point, West Point, NY 10996, USA
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Ethan Laudermilch
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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Denise Haslwanter
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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J. Maximilian Fels
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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M. Eugenia Dieterle
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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Rohit K. Jangra
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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Jason Barnhill
5Department of Chemistry and Life Science, United States Military Academy at West Point, West Point, NY 10996, USA
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Amanda Mengotto
6Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
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Duncan Kimmel
6Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
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Johanna P. Daily
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
6Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
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Liise-anne Pirofski
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
6Division of Infectious Diseases, Department of Medicine, Albert Einstein College of Medicine and Montefiore Medical Center, New York, NY 10461, USA
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Kartik Chandran
4Department of Microbiology and Immunology, Albert Einstein College of Medicine, New York, NY 10461, USA
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Michael Brenowitz
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Scott J. Garforth
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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Edward T. Eng
2National Resource for Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY, 10027, USA
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  • ORCID record for Edward T. Eng
  • For correspondence: eeng@nysbc.org jon.lai@einsteinmed.org steve.almo@einsteinmed.org
Jonathan R. Lai
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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  • For correspondence: eeng@nysbc.org jon.lai@einsteinmed.org steve.almo@einsteinmed.org
Steven C. Almo
1Department of Biochemistry, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY, 10461, USA
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  • For correspondence: eeng@nysbc.org jon.lai@einsteinmed.org steve.almo@einsteinmed.org
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ABSTRACT

Coronavirus disease 2019 (COVID-19) is a global health crisis caused by the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and there is a critical need to produce large quantities of high-quality SARS-CoV-2 Spike (S) protein for use in both clinical and basic science settings. To address this need, we have evaluated the expression and purification of two previously reported S protein constructs in Expi293F™ and ExpiCHO-S™ cells, two different cell lines selected for increased expression of secreted glycoproteins. We show that ExpiCHO-S™ cells produce enhanced yields of both SARS-CoV-2 S proteins. Biochemical, biophysical, and structural (cryo-EM) characterization of the SARS-CoV-2 S proteins produced in both cell lines demonstrate that the reported purification strategy yields high quality S protein (non-aggregated, uniform material with appropriate biochemical and biophysical properties). Importantly, we show that multiple preparations of these two recombinant S proteins from either cell line exhibit identical behavior in two different serology assays. We also evaluate the specificity of S protein-mediated host cell binding by examining interactions with proposed binding partners in the human secretome. In addition, the antigenicity of these proteins is demonstrated by standard ELISAs, and in a flexible protein microarray format. Collectively, we establish an array of metrics for ensuring the production of high-quality S protein to support clinical, biological, biochemical, structural and mechanistic studies to combat the global pandemic caused by SARS-CoV-2.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Additional Authors and Methods were added for the collection and curation of serum, and the development of the ELISA assay used in this paper.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 17, 2020.
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Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis
Natalia G. Herrera, Nicholas C. Morano, Alev Celikgil, George I. Georgiev, Ryan J. Malonis, James H. Lee, Karen Tong, Olivia Vergnolle, Aldo B. Massimi, Laura Y. Yen, Alex J. Noble, Mykhailo Kopylov, Jeffrey B. Bonanno, Sarah C. Garrett-Thomson, David B. Hayes, Robert H. Bortz III, Ariel S. Wirchnianski, Catalina Florez, Ethan Laudermilch, Denise Haslwanter, J. Maximilian Fels, M. Eugenia Dieterle, Rohit K. Jangra, Jason Barnhill, Amanda Mengotto, Duncan Kimmel, Johanna P. Daily, Liise-anne Pirofski, Kartik Chandran, Michael Brenowitz, Scott J. Garforth, Edward T. Eng, Jonathan R. Lai, Steven C. Almo
bioRxiv 2020.06.14.150607; doi: https://doi.org/10.1101/2020.06.14.150607
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Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis
Natalia G. Herrera, Nicholas C. Morano, Alev Celikgil, George I. Georgiev, Ryan J. Malonis, James H. Lee, Karen Tong, Olivia Vergnolle, Aldo B. Massimi, Laura Y. Yen, Alex J. Noble, Mykhailo Kopylov, Jeffrey B. Bonanno, Sarah C. Garrett-Thomson, David B. Hayes, Robert H. Bortz III, Ariel S. Wirchnianski, Catalina Florez, Ethan Laudermilch, Denise Haslwanter, J. Maximilian Fels, M. Eugenia Dieterle, Rohit K. Jangra, Jason Barnhill, Amanda Mengotto, Duncan Kimmel, Johanna P. Daily, Liise-anne Pirofski, Kartik Chandran, Michael Brenowitz, Scott J. Garforth, Edward T. Eng, Jonathan R. Lai, Steven C. Almo
bioRxiv 2020.06.14.150607; doi: https://doi.org/10.1101/2020.06.14.150607

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