ABSTRACT
Nitric oxide (NO) is a second messenger that regulates a broad range of physiological processes in plants. NO-derived molecules called reactive nitrogen species (RNS) can react with unsaturated fatty acids generating nitrated fatty acids (NO2-FA). NO2-FA work as signaling molecules in mammals where production and targets have been described under different stress conditions. Recently, NO2-FAs were detected in plants, however their role(s) on plant physiological processes is still poorly known. Here we show that exogenous application of nitro-oleic acid (NO2-OA) inhibits Arabidopsis primary root growth; this inhibition is not likely due to nitric oxide (NO) production or impaired auxin or cytokinin root responses. Deep analyses showed that roots incubated with NO2-OA had a lower cell number in the division area. Although this NO2-FA did not affect the signaling mechanisms maintaining the stem cell niche, plants incubated with NO2-OA showed a reduction of cell division in the meristematic area. Therefore, this work shows that NO2-OA inhibits mitotic processes subsequently reducing primary root growth.
INTRODUCTION
The formation of nitrolipids was initially proposed in animals from the observation that nitric oxide (NO) inhibited lipid oxidation propagation reactions (Rubbo et al., 1994). The nitration of fatty acids is induced by species derived from NO (Freeman et al., 2008). In animals, nitrated lipids are signaling molecules, acting as intermediaries in potent cascades of signal transduction, which translate into changes in protein functionality due to post-translational modifications (Batthyany et al., 2006; Rubbo and Radi 2008; Trostchansky and Rubbo 2008; Schopfer et al., 2011). So far, there are few reports about the detection of NO2-FA in plants. Specifically, adducts between NO2-OA and Cys (NO2-OA-Cys) together with nitro-conjugated linoleic acid (NO2-cLA) were detected in olive fruits and Extra Virgin Olive Oil (EVOO) although nor free NO2-OA was detected in olives (Fazzari et al., 2014). NO2-OA was recently detected in the free fatty acid fraction of seeds and seedlings of Brassica napus (Vollar et al., 2020). Also, nitro-linolenic acid (NO2-Ln) was observed in cell suspension cultures, seeds, seedlings and leaves of the model plant Arabidopsis (Mata-Perez et al., 2016a) and in important crops such as rice and pea (Mata-Perez et al., 2016b). Exogenous application of NO2-Ln induced both and antioxidant response and the chaperone network in Arabidopsis (Mata Perez et al., 2016a) and NO production in Arabidopsis primary root tip (Mata Perez et al., 2016c). Exogenous application of nitro-oleic acid (NO2-OA) induced reactive oxygen species (ROS) production via activation of NADPH oxidases and not NO production in tomato cell suspensions (Arruebarrena Di Palama et al., 2020). Arabidopsis NADPH oxidase mutants showed that NADPH isoform D (RBOHD) was required for NO2-OA-induced ROS production in leaves (Arruebarrena Di Palma et al., 2020).
NO is a well-established second messenger in plants and is involved in the development of the root system. NO regulates processes such as the formation of root hairs in Arabidopsis and lettuce (Lactuca sativa L) (Lombardo et al., 2006), as well as the formation of adventitious roots via the activation of MAPK in cucumber (Cucumis sativus) (Pagnussat et al., 2004). The root is divided in the mersitematic/division zone, the elongation zone and the differentiation zone. The meristematic cells, a cell type with a high rate of cell division, coordinates the growth and development of the root. In Arabidopsis, NO targets the cells in the elongation zone, inhibiting the cellular elongation mediated by gibberellins (Fernandez-Marcos et al., 2012). In addition, NO decreases the levels of the auxin transporters (PINs) in the membrane, affecting the transport and distribution of auxins and altering downstream signaling (Fernandez-Marcos et al., 2011). High levels of NO inhibit the development of the primary root, reducing the meristematic zone, directly affecting mitotically active cells (Fernandez-Marcos et al., 2011).
Most of the plant hormones (abscisic acid, auxins, cytokinins, ethylene, gibberellins and brassinosteroids) regulate cell division and elongation processes (Benkova and Hejatko 2009, Wolters and Jürgens 2009). The root stem cell niche at the root apical meristem is composed of stem cells with high rate of division given rise to specific root cells lineages, which are surrounding a group of cells with a low division rate called the quiescent center (QC) (Scheres 2007). QC plays an important role in maintaining undifferentiated stem cells (van den Berg et al., 1997). The differentiation of daughters stem cells give rise to several cell types integrating the root architecture, being growth defined by the balance between cell division and elongation (Dolan et al., 1993; Scheres et al., 1994).
In this work we show that NO2-OA inhibits primary root growth. This inhibition is not due to NO signaling, altered auxine/cytokinin responses or altered mechanism that maintain the stem cell niche. Here we show that exogenous application of NO2-OA reduce the cell cycle marker CYCB1:1, resulting in a short meristem.
RESULTS
NO2-OA inhibits primary root growth in Arabidopsis
Arabidopsis seedlings present basal levels of NO2-Ln that increase when seedlings are subjected to wounding, cadmium or low temperature stress (Mata Perez et al., 2016a). All major nitro lipids share the same electrophilic center, similar reactivity properties and therefore a common mechanism of action (Baker et al., 2004). In animals, NO2-OA has long been used as a surrogate to study and understand the regulation, signaling and metabolism of nitrated fatty acids given its additional stability and well developed synthetic routes (Freeman et al., 2008). We studied the effect of exogenous application of NO2-OA on primary root growth of Arabidopsis seedlings. Figure 1 shows dose-dependent inhibition of primary root growth upon NO2-OA treatments compared to untreated or oleic acid (OA) treated seedlings.
The inhibition of the primary root growth could be due to a lower number of cells at the apical meristem and/or a lower cell size or cell elongation rate on the elongation zone of the root. To determine the processes by which NO2-OA is modulating root growth, we measured the size and the number of root cells in the meristem. Five-day old Arabidopsis seedlings were treated for another five days with NO2-OA or OA, and the root cells were analyzed by DIC microscopy. The column of cortex cells was counted from the quiescent center (QC) to the last cell where its length was not greater than 50% compared to the previous one according to what was described in Perilli & Sabatini 2010 (Figure 2 A). As shown in Figure 2 B control or OA treated roots have an average of 36±5 cortex cells in the division zone. NO2-OA-treated roots have a significant reduction in the number of cortex cells (Figure 2 B). Roots treated with 12.5 or 25 μM of NO2-OA showed an average of 29±4 and 19±4 cells, respectively. The extension of the meristematic zone was measured as the distance from the QC to the last cell of the division zone (Figure 2 C). In control roots, the meristematic zone measures 300±44 μm, while NO2-OA treated roots shows a strong reduction of the meristematic zone (240±40 μm and 180±22 μm for 12.5 or 25 μM NO2-OA respectively). The cell size at the elongation zone was not significantly different between treated or not treated roots, being the size of cortical elongated cells 168.8±2.9, 171.3±2.6 and 166.7±1.9 μm (mean ± SE, n=6) for control, OA and NO2-OA-treated roots, respectively (Figure 2 D). A establish balance between cell division and cell differentiation governs meristem size and thus root growth. Since no differences were found in the size of the cells in the differentiation zone, and a reduction of number of cortical cells is observed, then the inhibition of root growth is probably due to a regulation of cell division process.
It has been previously reported that NO inhibits the growth of the primary root in Arabidopsis (Fernandez-Marcos et al., 2011). In addition, in Arabidopsis roots and cell suspensions, NO2-Ln treatments induced NO production (Mata-Pérez et al., 2016c). Therefore the evidence suggested the NO2-OA might be affecting root growth in a NO-dependent manner. However, the analysis of NO production, using the florescent probe DAF-FM-DA in 25 μM NO2-OA treated roots shows no florescence in OA or NO2-OA treated roots (Figure 3). We used 100 μM of the NO donor SNP as a positive control in order to confirm the functionality and distribution of the probe within the root. Figure 3 show an intense and equally distribution of florescence throughout the root tip in SNP treated roots. These results show that NO2-OA treatment does not trigger NO production in Arabidopsis seedlings suggesting that NO2-OA is not inhibiting primary root growth via NO signaling.
NO2-OA reduces the number of mitotic cells
A reduction in the number of meristem cells could be due to a hormonal unbalance. Auxin distribution is important in regulating primary root growth. One of the described roles for auxin in the root tip is to maintain the stem cell niche and promote cell division (Grieneisen et al., 2007). In order to study auxin-response after NO2-OA application, we used Arabidopsis plants with auxin response reporter DR5pro:GUS. DR5pro:GUS activity is observed in the stem cell niche, columella cells and a more subdued staining in vascular tissue in all treatments. (Figure 4 A). Therefore, this data suggests that auxin responses are not altered because of NO2-OA application. In order to confirm the latter result, we used DII-Venus as an independent reporter that shows endogenous auxin abundance, reflecting the input into the auxin-signaling pathway. DII-Venus is a fusion of auxin-dependent degradation domain II of an Aux/IAA protein to Venus fluorescent protein, such that the absence of fluorescence marks auxin accumulation (Brunoud et al., 2012). In agreement with DR5pro:GUS activity, auxin levels (evidenced as the absence of fluorescence) are high in the columella, the quiescent center, and the differentiating xylem cells on control or 12,5 μM NO2-OA or OA treated roots (Figure 4 B). In the meristem zone, from QC to TZ, auxin levels are low in control and OA treated roots, visualized as an intense fluorescence of the DII-Venus protein in the nuclei of the cortex and epidermal cells (Figure 4 B). However, when we quantified the fluorescence intensity, NO2-OA treated roots showed less fluorescence compared to OA or non-treated roots (Figure 4 C), suggesting an increase in auxin level. However, exogenous application of auxin to wild-type Arabidopsis roots caused an increase in meristem size (Dello Ioio et al., 2007), which is in contraposition to the observed effect that NO2-OA has on root growth. Thus, we cannot discard other explanations for a slight reduction on the fluorescence levels of DII-Venus in NO2-OA treated root cells, especially since DII-Venus is a semiquantitative reporter. Despite that fact, both auxin reporters, DR5pro-GUS and DII-Venus, unequivocally show that NO2-OA does not decrease auxin levels at the stem cells, columella or vascular tissue. Thus, auxin responses (Figure 4 A) and levels (Figure 4 B and C) are not altered during NO2-OA application on stem cells, columella and the differentiating vascular cells.
The role of auxins in root growth is associated with that of their hormone antagonists, cytokinins. It has been described that the size of root apical meristem increases in mutants from the cytokinin synthetic pathway and decreases by the exogenous application of cytokinins (Dello Ioio et al., 2007; Miyawaki et al., 2004). We studied the cytokinin response with the cytokinin reporter TCS:GFP using confocal microscopy (Zürcher et al., 2013; Zürcher et al., 2016) Under control conditions, TCS:GFP is observed at the root tip, particularly in the calyptra (Figure 4 D). The roots treated with NO2-OA or OA did not show differences relative to the control (Figure 4 E). Altogether the results show that the reduction of meristematic cells in NO2-OA treated roots is independent of auxin or cytokinin responses.
Meristematic cells come from stem cells. Stem cells are in a microenvironment, where hormone concentrations and transcription factors play a fundamental role for its maintenance. The root stem cell niches, is formed by the QC and the adjacent stem cell initials (Petricka et al., 2012), which are specified by two parallel pathways: the PLETHORA (PLT) and SHORTROOT (SHR)/SCARECROW (SCR) pathways (Petricka et al., 2012; Heyman et al., 2014). SCR maintains QC and stem cell identity (Sabatini et al., 2003), in part by inducing the expression of WUSCHEL-RELATED HOMEOBOX5 (WOX5), a QC specific gene (Sarkar et al., 2007). Two types of transcription factors have been well studied regarding the preservation of undifferentiated stem cells, PLETHORA 1 (PLT1, at3g20840) and PLETHORA 2 (PLT2, at1g51190) (Aida et al., 2004; Galinha et al., 2007; Mähönen et al., 2014). High levels of these PLT genes localize in the area of cell division, whilst low PLT levels lead root cells to expand and differentiate The presence and distribution of PLT factors in the root tip regulate the size of the meristem (Aida et al., 2004; Kornet et al., 2009; Mähönen et al., 2014). The expression of PLT1 and PLT2 has been reported to colocalize with the location of auxin in the root tip (Xu et al., 2006; Aida et al., 2004). In order to determine if NO2-OA affects stem cells and QC, independent transgenic lines with the transcriptional fusion reporters proPLT1-CFP, proPLT2-CFP or proWOX5-GFP and the translational fusion reporter proPLT1:PLT-YFP were treated with NO2-OA or OA. As seen in Figure 4 F (PLT1 promotor activity) and H (PLT1 protein levels), untreated seedlings shows the highest level of PLT1 expression in the QC and stem cells, gradually decreasing the intensity in the meristematic area. No differences were observed in this expression pattern for NO2-OA-treated roots (Figure 4 G and I). In the case of the transcription factor PLT2 the expression is restricted to the QC, showing no changes in any of the treatments (supplemental figure 1). We analyzed the expression of QC marker proWOX5-GFP (Sarkar et al., 2007) and we observed the same expression pattern in NO2-OA compared to OA or non-treated roots (Figure 4 J and K). These results show that the expression of PLT and WOX5 are not affected in roots treated with NO2-OA, indicating that NO2-FA does not affect the signaling mechanisms related to stem cell niche maintenance.
A reduction in the number of cells in the meristematic zone indicates that the process of cell division is likely to be affected, and consequently the number of cells in mitosis is reduced. To confirm this, we use transgenic plants with the transcriptional fusion reporter proCYCB1.1-GUS construct. Cyclin B1.1 (CYCB1.1) is an enzyme that belongs to the cyclin family and it is expressed in the G2/M (Colón-Carmona et al., 1999). Figure 5 shows a significant reduction on the number of cells in mitosis in NO2-OA treated roots with respect to control or OA treated roots, indicating the NO2-OA is affecting cell division pace at the meristematic zone.
DISCUSSION
Nitrated fatty acids are well-described signaling molecules in animals (Freeman et al., 2008; Batthyany et al., 2006; Rubbo and Radi 2008; Trostchansky and Rubbo 2008; Schopfer et al., 2011). Detection of NO2-FA in plants was reported in Arabidopsis, pea, rice, and olives (Fazzari et al., 2014; Mata-Perez et al., 2016a,b). Our study focused on evaluating the role of a prototypical NO2-FA on Arabidopsis thaliana root development. For that, we decided to emulate the approach used in mammals by using the exogenous application of NO2-OA, allowing us to reduce the complexity of the study and focus on its functional aspects. As mentioned earlier, in animals, NO2-OA has long been used as a surrogate to study and understand the regulation, signaling, and metabolism of NO2-FA given its additional stability and well developed synthetic routes (Freeman et al., 2008). The isomers of NO2-OA used in our experiments have been extensively characterized and correspond to an equal proportion of the 9-NO2-OA and 10-NO2-OA species (Woodcock et al., 2013). Exogenous application of NO2-OA for functional studies has already been used and reported in plants. In Arabidopsis, exogenous application of NO2-OA regulates the expression of specific genes as demonstrated by qRT-PCR analysis (Mata Perez et al., 2016a), and, in tomato and Arabidopsis NO2-OA, functions as a signal that triggers ROS production via NADPH oxidase activation (Arruebarrena Di Palma et al., 2020). We acknowledge the limitations of studying NO2-OA in Arabidopsis root development, as it has not been detected in the free fatty acid fraction in Arabidopsis seedlings (Mata-Perez et al., 2016a). Nevertheless, the detection of free acid NO2-OA has been challenging as it rapidly adducts to thiol-containing proteins and glutathione, as demonstrated in mice plasma (Rudolph et al., 2010). This concept is further supported by studies in olives, where NO2-OA was found conjugated to proteins and not in the free fatty acid fraction (Fazzari et al., 2014). Recently, NO2-OA was detected in the free fatty acid fraction of Brassica seeds and seedlings, further supporting their formation and important role in plant physiology (Vollar et al., 2020). The discovery of the formation of NO2-Ln in Arabidopsis seeds and seedlings and the detection of NO2-OA in Brassica supports the concept of NO2-FA as a class of signaling species in plants (Mata Perez et al., 2016a; Vollar er al., 2020). It is in this context that our findings of the effects of NO2-OA on root development gain relevance, suggesting that NO2-FAs have common important formation pathways and roles in seeds and seedlings in different plant species.
Here we show that exogenous application of NO2-OA inhibits the growth of the primary root in Arabidopsis. The study of different root areas showed that cell size in the elongation-differentiation zone is not affected by NO2-OA. On the other hand, roots treated with NO2-OA showed a reduction in the size of the division zone. The total number of cortex cells and the total size of the meristematic area are reduced in roots treated with NO2-OA, indicating that the process of cell division is affected. The existing bibliography on the biological effects of Nitro Fatty acid in plants, suggest that they are acting as NO donors. In tomato cell suspensions, NO2-OA was unable to induce NO production (Arruebarrena Di Palma et al., 2020). Interestingly, under our experimental conditions, NO2-OA is not affecting endogenous NO levels in Arabidopsis seedlings, indication that the inhibition of primary root growth by NO2-OA does not involve a NO dependent signaling
Root growth is controlled by cell division and cell elongation rates. Both processes are strongly regulated by hormones, mainly auxins and cytokinins. Although auxins strongly control root growth, it has been shown that the interaction between these two signals is relevant for proper development (Dello loio et al., 2008). Auxins help to promote cell division and maintain the niche of stem cells and promote cytokinin biosynthesis, which consequently favors cell elongation and differentiation (Dello Ioio et al., 2008, Dello Ioio et al., 2007, Miyawaki K, et al., 2004). There is a strong relationship between auxin signaling and NO in root development. Mutants with low endogenous NO levels such as nia1nia2 and noa1 have lower auxin endogenous concentration (Sanz et al., 2014). However, NO inhibits the transport of auxins from the stem apical meristem to the root apical meristem (Fernandez Marcos et al., 2011). The inhibitory effect on root growth by NO is related to the inhibition of the signaling cascade caused by auxins, since the reduction in DR5:GUS reporter activity is seen in the root tip, as a consequence of lower levels of expression of PIN1 proteins (Fernandez-Marcos et al., 2011). Our results show that NO2-OA has an inhibitory effect on primary root growth and is not due to an unbalance in auxin or cytokinin levels. This further supports the idea that the effect of NO2-OA on root growth is different than that reported for NO donors. An RNAseq analysis of Arabidopsis cells treated with NO2-Ln, showed expression regulation of a large number of genes, but none of them related to signaling mediated by auxins or cytokinins (Mata Perez et al., 2016a). Consistently, our results show that NO2-OA does not affect auxins or cytokinins signaling.
Since the meristematic area is reduced, we studied the possibility that NO2-OA could affect the stem cell niche. To do so, we used the transcriptional proPLT1:CFP, proPLT2:CFP and the translational proPLT1:PLT1-CFP constructions considering PLT are transcription factors essential for QC identity and stem cell activity. The PLT genes are transcribed in response to auxin accumulation and are dependent on auxin response transcription factors. There is a correlation between PLT levels and root location, showing high levels in the division area, moderate in the transition zone and low levels in the elongation/differentiation side (Aida M, et al., 2004, Galinha et al., 2007). The expression levels of PLT1 and PLT2 are related to the size of the meristem. The double mutant plt1-4;plt2-2 showed a reduction in the size of the meristem and short primary root. On the other hand, overexpression of PLT2 showed an increase in the size of the meristem, particularly due to an increase in the number of cells (Aida et al 2004; Kornet et al., 2009; Mähönen et al., 2014). The expression of PLT is strongly related to cell division and the inhibition of differentiation since the expression of PLT2 in epidermal cells inhibits the formation of root hairs (Mähönen et al., 2014). Although there is a strong correlation between PLT 1 and PLT2 and auxin levels (Galinha et al., 2007), there is no decrease of DR5:GUS reporter activity in the plt1-4; plt2-2 double mutant (Aida et al., 2004; Kornet et al., 2009). Roots treated with NO2-OA had shorter meristem and a lower number of cells, but this was not due to altered levels in terms of expression or location of PLT1/2. In addition, we studied the localization of the QC transcription factor WOX5. WOX5 maintains stem cells in Arabidopsis roots (Sarkar et al., 2007). WOX5 expression was no affected by NO2-OA treatment. Visualization of PLT1, PLT2 and WOX5 allowed us discard the effect of NO2-OA treatment on those transcription factors. Together these experiments suggest that the auxin and cytokinin balance and the transcription factors PLT1, PLT2 and WOX5, which are necessary for the development and maintenance of the stem cell niche, are not affected by NO2-OA treatments. Based on the observed results in which the division area is affected but not the elongation zone, QC or stem cells, we can conclude that NO2-OA has a selective effect on the process of cell division.
The CyclinB1.1 gene codifies to a mitotic cyclin. The transcription of CycB1.1 is associated with the G2 and M phase and is a marker for active cell division (Ferreira et al., 1994b). The construction of promoter region of CycB1.1 fused with GUS is widely used to study particularly mitotic cell in different plant tissue (Colón-Carmona et al., 1999; Burssens et al., 2000). The results obtained with the pCYCB1.1-GUS confirm that NO2-OA inhibits cell division process in a dose-dependent manner.
Nitrolipids are weak electrophiles that can bind covalently to cystein or histidine residues of protein by Michael addition and modify stability or function of proteins (Batthyany et al., 2006; Baker et al., 2007). In animal few proteins have been described to be modified by NO2-FA, being most of them related to anti-inflammatory processes, such as the Nuclear factor (erythroid-derived 2) -like 2 (Nrf2), peroxisome proliferator-activated receptor-γ (PPARγ) and nuclear factor-kappa B (NF-kB) (Cui et al., 2006; Kansanen et al., 2011; Li et al., 2008). In plants, post-translational modifications mediated by NO2-FA were, so far, only reported for APX (Aranda-Caño et al., 2019). In the same review by Aranda-Caño, the authors mention that they identified a high number of nitroalkylated proteins that increase in cell cultures treated with NO2-Ln. It has been described that defects in the dynamics of the ACTIN cytoskeleton produce different phenotypes in root hairs and primary root (Gilliland et al., 2002, Yi et al., 2005, Kandasamy et al., 2009). Recent studies show that the S-Sulfhydration of the ACT2, ACT7 and ACT8 proteins modifies the dynamics of the cytoskeleton, decreasing the levels of the filamentous with respect to the globular form of the protein causing inhibition in the growth of the primary root as well as in the length of root hairs (Li et al., 2018). In the present paper we show that NO2-OA has physiological effects on root development and, specifically, in the process of cell division in the meristematic zone. Further research will be needed to elucidate whether NO2-OA interfere with cell division by affecting, directly, the order of actin or actin filaments, or through the regulation of other cell cycle regulating proteins.
MATERIALS AND METHODS
Chemicals and Reagents
OA was purchased from Nu-Chek Prep (Elysian, MN). NO2-OA and biotinylated NO2-OA were synthesized and purified as previously described (Woodcock el at., 2013; Bonacci et al., 2011; respectively).
Plant material and growth conditions
Seeds from wild type Arabidopsis (Arabidopsis thaliana Col-0), pCYCB1;1:GUS (Colón-Carmona et al., 1999), TCS:GFP (Zucher et al., 2013), DR5pro:GUS (Ulmasov et al., 1997), PLT1pro:PLT1-YFP, PLT1pro:CFP, and PLT2pro:CFP (Galinha et al., 2007), CYCB1;1pro:GUS (Colón-Carmona et al., 1999), WOX5pro:GFP (Sarkar et al., 2007) and DII-Venus (Brunoud et al., 2012) were surface sterilized in 35% sodium hypochlorite, stratified for 48 hours at 4°C in darkness. Seeds were germinated on vertically oriented plates containing 0.5X Murashige and Skoog (MS) salt mixture with Gamborg’s vitamins and 0.8% agar, and grown at 25°C using a 16-h-light/8-h-dark photoperiod.
Seedling treatments
Five-days old seedlings were transferred onto plates containing Murashige and Skoog (MS) salt mixture with Gamborg’s vitamins and 0.8% agar, and grown at 25°C using a 16-h-light/8-h-dark photoperiod with OA, NO2-OA or non-treated for other five days.
Measurement of primary root length, meristem length and cell size
Root length and meristem length were assessed in at least five independent experiments. Primary root length was measured using the software analysis package Fiji. For statistical, we used R software, we applied one-way ANOVA and Tukey’s multiple comparison test for the experiments.
To measure number of cortex cells, meristem length and cell size, seedlings were fixed in Hoyer’s solution for 30 min. The material was observed on a Zeiss Axioplan imaging 2 microscope under DIC optics. We used Poisson’s test for the experiment. Images were captured on an Axiocam HRC CCD camera (Zeiss) using the Axiovision program (version 4.2). Images analysis was performed using software package Fiji. The size of elongated cells were measured on two cells per root, on cells immediately before to the first root hair cell on 6 individuals per treatment.
Nitric oxide detection on roots
Arabidopsis-treated roots were incubated in the presence of 10 μM of the fluorescent probe 4-aminomethyl-2’,7’-difluorofluorescein diacetate (DAF-FM DA) for 30 min. Roots were visualized under epifluorescence microscopy (Ex/Em wavelengths 495/515 nm).
ß-Glucuronidase (GUS) expression
For GUS staining, Arabidopsis treated roots were incubated in GUS-staining buffer [5 mM EDTA, 0.1% Triton X-100, 5 mM K4Fe(CN)6, 0.5 mM K3Fe (CN)6], and 1 mg/mL X-Gluc (Rose Scientific) in 50 mM NaPi buffer, pH 7.0] for 3 h at 37°C. Then the tissue was cleared with Hoyer’s solution for 30 min. The material was observed on a Zeiss Axioplan imaging 2 microscope under DIC optics. Images were captured on an Axiocam HRC CCD camera (Zeiss) using the Axiovision program (version 4.2). GUS staining was measure using Fiji software (Béziat et al., 2017), we defined a ROI to analyze all images of the respective experiment as described by Feraru et al 2019.
Confocal microscopy
Plant materials used in this study were previously described: PLT1pro:PLT1-YFP, PLT1pro:CFP, and PLT2pro:CFP (Galinha et al., 2007), CYCB1;1pro:GUS (Colón-Carmona et al., 1999), WOX5pro:GFP (Sarkar et al., 2007) and DII-Venus (Brunoud et al., 2012).
Arabidopsis roots from pPLT1:CFP y pPLT2:CFP transgenic plants were observed in confocal microscopy (Nikon Eclipse C1 Plus Ex/Em, 458/515).
Arabidopsis roots from TCS:GFP transgenic plants and WOX5pro:GFP were observed in confocal microscopy (Nikon Eclipse C1 Plus Ex/Em, 488/561) and quantified using Fiji software. We defined a ROI in the region that showed the most representative signal distribution. We used the same ROI (size and shape) to analyze all images of the respective experiment.
Arabidopsis root from PLT1pro:PLT1-YFP and DII-Venus were observed in confocal microscopy (Nikon Eclipse C1 Plus Ex/Em, 514/550). For DII-Venus marker we define two sections of the root, down QC is the calyptra zone, and up QC is the region above QC including QC, SCN (stem-cell niche) and a portion of meristem as indicated in Figure 4. We used the same ROI (size and shape) to analyze all images of the respective experiment.
PLT1pro:CFP, PLT1pro:PLT1-YFP and PLT2pro:CFP fluorescence was measure using Fiji software as described by Ercoli et al 2018.
Data Analysis
We used R software for all data analysis. The most representative images are shown throughout the article
Acknowledgments
We thanks to Ramiro Paris, Ramiro Rodriguez y Magdalena Vázquez for technical assistance on reporters analysis and for providing material for the DII-VENUS, WOX5, CYCB1:1 and PLT experiments.
Footnotes
Highlight: Nitrated fatty acids regulate root development