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SARS-CoV-2 growth, furin-cleavage-site adaptation and neutralization using serum from acutely infected, hospitalized COVID-19 patients

William B. Klimstra, Natasha L. Tilston-Lunel, Sham Nambulli, James Boslett, Cynthia M. McMillen, Theron Gilliland, Matthew D. Dunn, Chengqun Sun, Sarah E Wheeler, Alan Wells, Amy L. Hartman, Anita K. McElroy, View ORCID ProfileDouglas S. Reed, Linda J. Rennick, W. Paul Duprex
doi: https://doi.org/10.1101/2020.06.19.154930
William B. Klimstra
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
2Department of Microbiology and Molecular Genetics, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
3Department of Immunology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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  • For correspondence: [email protected] [email protected]
Natasha L. Tilston-Lunel
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
2Department of Microbiology and Molecular Genetics, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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Sham Nambulli
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
2Department of Microbiology and Molecular Genetics, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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James Boslett
4Department of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA
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Cynthia M. McMillen
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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Theron Gilliland
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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Matthew D. Dunn
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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Chengqun Sun
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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Sarah E Wheeler
5Department of Pathology, University of Pittsburgh School of Public Health, Pittsburgh, Pennsylvania, USA
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Alan Wells
5Department of Pathology, University of Pittsburgh School of Public Health, Pittsburgh, Pennsylvania, USA
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Amy L. Hartman
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
6Department of Infectious Diseases and Microbiology, University of Pittsburgh School of Public Health, Pittsburgh, Pennsylvania, USA
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Anita K. McElroy
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
7University of Pittsburgh, Division of Pediatric Infectious Disease, Pittsburgh, Pennsylvania, USA
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Douglas S. Reed
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
3Department of Immunology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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  • ORCID record for Douglas S. Reed
Linda J. Rennick
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
2Department of Microbiology and Molecular Genetics, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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W. Paul Duprex
1Center for Vaccine Research, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
2Department of Microbiology and Molecular Genetics, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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  • For correspondence: [email protected] [email protected]
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Abstract

SARS-CoV-2, the causative agent of COVID-19, emerged at the end of 2019 and by mid-June 2020, the virus has spread to at least 215 countries, caused more than 8,000,000 confirmed infections and over 450,000 deaths, and overwhelmed healthcare systems worldwide. Like SARS-CoV, which emerged in 2002 and caused a similar disease, SARS-CoV-2 is a betacoronavirus. Both viruses use human angiotensin-converting enzyme 2 (hACE2) as a receptor to enter cells. However, the SARS-CoV-2 spike (S) glycoprotein has a novel insertion that generates a putative furin cleavage signal and this has been postulated to expand the host range. Two low passage (P) strains of SARS-CoV-2 (Wash1: P4 and Munich: P1) were cultured twice in Vero-E6 cells and characterized virologically. Sanger and MinION sequencing demonstrated significant deletions in the furin cleavage signal of Wash1: P6 and minor variants in the Munich: P3 strain. Cleavage of the S glycoprotein in SARS-CoV-2-infected Vero-E6 cell lysates was inefficient even when an intact furin cleavage signal was present. Indirect immunofluorescence demonstrated the S glycoprotein reached the cell surface. Since the S protein is a major antigenic target for the development of neutralizing antibodies we investigated the development of neutralizing antibody titers in serial serum samples obtained from COVID-19 human patients. These were comparable regardless of the presence of an intact or deleted furin cleavage signal. These studies illustrate the need to characterize virus stocks meticulously prior to performing either in vitro or in vivo pathogenesis studies.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Minor typographical edits.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 22, 2020.
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SARS-CoV-2 growth, furin-cleavage-site adaptation and neutralization using serum from acutely infected, hospitalized COVID-19 patients
William B. Klimstra, Natasha L. Tilston-Lunel, Sham Nambulli, James Boslett, Cynthia M. McMillen, Theron Gilliland, Matthew D. Dunn, Chengqun Sun, Sarah E Wheeler, Alan Wells, Amy L. Hartman, Anita K. McElroy, Douglas S. Reed, Linda J. Rennick, W. Paul Duprex
bioRxiv 2020.06.19.154930; doi: https://doi.org/10.1101/2020.06.19.154930
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SARS-CoV-2 growth, furin-cleavage-site adaptation and neutralization using serum from acutely infected, hospitalized COVID-19 patients
William B. Klimstra, Natasha L. Tilston-Lunel, Sham Nambulli, James Boslett, Cynthia M. McMillen, Theron Gilliland, Matthew D. Dunn, Chengqun Sun, Sarah E Wheeler, Alan Wells, Amy L. Hartman, Anita K. McElroy, Douglas S. Reed, Linda J. Rennick, W. Paul Duprex
bioRxiv 2020.06.19.154930; doi: https://doi.org/10.1101/2020.06.19.154930

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