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Rapid and Efficient BAC Recombineering: Gain & Loss Screening System

Myeong Uk Kuk, View ORCID ProfileSekyung Oh, Joon Tae Park
doi: https://doi.org/10.1101/2020.06.22.166017
Myeong Uk Kuk
1Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University, Incheon, Korea
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Sekyung Oh
2Department of Medicine, Catholic Kwandong University College of Medicine, Incheon, Korea
3Institute for Biomedical Research, Catholic Kwandong University International St. Mary’s Hospital, Incheon, Korea
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  • ORCID record for Sekyung Oh
  • For correspondence: ohskjhmi@ish.ac.kr joontae.park@inu.ac.kr
Joon Tae Park
1Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University, Incheon, Korea
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  • For correspondence: ohskjhmi@ish.ac.kr joontae.park@inu.ac.kr
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Abstract

Recombineering has been developed to modify bacterial artificial chromosome (BAC) via homologous recombination. Nevertheless, as a screening strategy to identify the correct clone was not properly developed, it was difficult to obtain a correct clone within a limited time period. To address these issues, we developed a new screening method (a gain & loss screening system) that enables the efficient identification of the recombineered clone. Simple inoculation of cells into LB medium with appropriate antibiotics visually revealed the positive clones within 24 h. DNA sequencing confirmed 100% accuracy of this screening method by showing that all positive clones exhibited recombinant sequences. Furthermore, our new method allowed us to complete the entire procedure consisting of 1st recombineering, flip-out and 2nd recombineering in just 13 days. Overall, our new strategy may provide a new avenue for BAC recombeerining, as evidenced by markedly increased accuracy and subsequently shortened recombineering duration.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 23, 2020.
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Rapid and Efficient BAC Recombineering: Gain & Loss Screening System
Myeong Uk Kuk, Sekyung Oh, Joon Tae Park
bioRxiv 2020.06.22.166017; doi: https://doi.org/10.1101/2020.06.22.166017
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Rapid and Efficient BAC Recombineering: Gain & Loss Screening System
Myeong Uk Kuk, Sekyung Oh, Joon Tae Park
bioRxiv 2020.06.22.166017; doi: https://doi.org/10.1101/2020.06.22.166017

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