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Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission
Nicolae Sapoval, Medhat Mahmoud, Michael D. Jochum, Yunxi Liu, R. A. Leo Elworth, Qi Wang, Dreycey Albin, Huw Ogilvie, Michael D. Lee, Sonia Villapol, Kyle M. Hernandez, Irina Maljkovic Berry, Jonathan Foox, Afshin Beheshti, Krista Ternus, Kjersti M. Aagaard, David Posada, View ORCID ProfileChristopher E. Mason, View ORCID ProfileFritz Sedlazeck, View ORCID ProfileTodd J. Treangen
doi: https://doi.org/10.1101/2020.07.02.184481
Nicolae Sapoval
1Department of Computer Science, Rice University, Houston, TX, USA
Medhat Mahmoud
2Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX
Michael D. Jochum
3Baylor College of Medicine and Texas Children’s Hospital, Houston, TX
Yunxi Liu
1Department of Computer Science, Rice University, Houston, TX, USA
R. A. Leo Elworth
1Department of Computer Science, Rice University, Houston, TX, USA
Qi Wang
4Systems, Synthetic, and Physical Biology (SSPB) Graduate Program, Houston, TX
Dreycey Albin
4Systems, Synthetic, and Physical Biology (SSPB) Graduate Program, Houston, TX
Huw Ogilvie
1Department of Computer Science, Rice University, Houston, TX, USA
Michael D. Lee
5Exobiology Branch, NASA Ames Research Center, Mountain View, CA
6Blue Marble Space Institute of Science, Seattle, WA
Sonia Villapol
7Houston Methodist Research Institute, Houston, TX
Kyle M. Hernandez
8Department of Medicine, University of Chicago, Chicago, IL
16Center for Translational Data Science, University of Chicago, Chicago, IL
Irina Maljkovic Berry
9Walter Reed Army Institute of Research, Silver Spring, MD
Jonathan Foox
10Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York
Afshin Beheshti
11KBR, Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA
Krista Ternus
12Signature Science, LLC, 8329 North Mopac Expressway, Austin TX 78759
Kjersti M. Aagaard
3Baylor College of Medicine and Texas Children’s Hospital, Houston, TX
David Posada
13Biomedical Research Center (CINBIO), University of Vigo, 36310 Vigo, Spain
14Department of Biochemistry, Genetics and Immunology School of Biology, University of Vigo, Vigo, Spain
15Galicia Sur Health Research Institute, 36310 Vigo, Spain
Christopher E. Mason
10Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York
Fritz Sedlazeck
2Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX
Todd J. Treangen
1Department of Computer Science, Rice University, Houston, TX, USA
Article usage
Posted July 02, 2020.
Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission
Nicolae Sapoval, Medhat Mahmoud, Michael D. Jochum, Yunxi Liu, R. A. Leo Elworth, Qi Wang, Dreycey Albin, Huw Ogilvie, Michael D. Lee, Sonia Villapol, Kyle M. Hernandez, Irina Maljkovic Berry, Jonathan Foox, Afshin Beheshti, Krista Ternus, Kjersti M. Aagaard, David Posada, Christopher E. Mason, Fritz Sedlazeck, Todd J. Treangen
bioRxiv 2020.07.02.184481; doi: https://doi.org/10.1101/2020.07.02.184481
Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission
Nicolae Sapoval, Medhat Mahmoud, Michael D. Jochum, Yunxi Liu, R. A. Leo Elworth, Qi Wang, Dreycey Albin, Huw Ogilvie, Michael D. Lee, Sonia Villapol, Kyle M. Hernandez, Irina Maljkovic Berry, Jonathan Foox, Afshin Beheshti, Krista Ternus, Kjersti M. Aagaard, David Posada, Christopher E. Mason, Fritz Sedlazeck, Todd J. Treangen
bioRxiv 2020.07.02.184481; doi: https://doi.org/10.1101/2020.07.02.184481
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