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The Roles of Space and Stochasticity in Computational Simulations of Cellular Biochemistry: Quantitative Analysis and Qualitative Insights
View ORCID ProfileM. E. Johnson, A. Chen, J. R. Faeder, P. Henning, I. I. Moraru, M. Meier-Schellersheim, R. F. Murphy, T. Prüstel, J. A. Theriot, A. M. Uhrmacher
doi: https://doi.org/10.1101/2020.07.02.185595
M. E. Johnson
1TC Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD, USA
A. Chen
1TC Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD, USA
J. R. Faeder
2Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
P. Henning
3Institute of Computer Science, University of Rostock, Rostock, Germany
I. I. Moraru
4Department of Cell Biology, Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT, USA
M. Meier-Schellersheim
5Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
R. F. Murphy
6Computational Biology Department, Department of Biological Sciences, Department of Biomedical Engineering, Machine Learning Department, Carnegie Mellon University, Pittsburgh, PA, USA
T. Prüstel
5Laboratory of Systems Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
J. A. Theriot
7Department of Biology and Howard Hughes Medical Institute, University of Washington, Seattle, WA USA
A. M. Uhrmacher
3Institute of Computer Science, University of Rostock, Rostock, Germany
Posted July 04, 2020.
The Roles of Space and Stochasticity in Computational Simulations of Cellular Biochemistry: Quantitative Analysis and Qualitative Insights
M. E. Johnson, A. Chen, J. R. Faeder, P. Henning, I. I. Moraru, M. Meier-Schellersheim, R. F. Murphy, T. Prüstel, J. A. Theriot, A. M. Uhrmacher
bioRxiv 2020.07.02.185595; doi: https://doi.org/10.1101/2020.07.02.185595
The Roles of Space and Stochasticity in Computational Simulations of Cellular Biochemistry: Quantitative Analysis and Qualitative Insights
M. E. Johnson, A. Chen, J. R. Faeder, P. Henning, I. I. Moraru, M. Meier-Schellersheim, R. F. Murphy, T. Prüstel, J. A. Theriot, A. M. Uhrmacher
bioRxiv 2020.07.02.185595; doi: https://doi.org/10.1101/2020.07.02.185595
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