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Synthetic promoter based azide biosensor toolkit to advance chemical-biology

View ORCID ProfileChandra Kanth Bandi, View ORCID ProfileKyle S. Skalenko, View ORCID ProfileAyushi Agrawal, Neelan Sivaneri, Margaux Thiry, View ORCID ProfileShishir P.S. Chundawat
doi: https://doi.org/10.1101/2020.07.08.193060
Chandra Kanth Bandi
aDepartment of Chemical & Biochemical Engineering, Rutgers The State University of New Jersey, Piscataway, NJ 08854, USA
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Kyle S. Skalenko
bDepartment of Genetics and Waksman Institute, Rutgers The State University of New Jersey, Piscataway, NJ 08854, USA
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Ayushi Agrawal
aDepartment of Chemical & Biochemical Engineering, Rutgers The State University of New Jersey, Piscataway, NJ 08854, USA
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Neelan Sivaneri
aDepartment of Chemical & Biochemical Engineering, Rutgers The State University of New Jersey, Piscataway, NJ 08854, USA
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Margaux Thiry
aDepartment of Chemical & Biochemical Engineering, Rutgers The State University of New Jersey, Piscataway, NJ 08854, USA
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Shishir P.S. Chundawat
aDepartment of Chemical & Biochemical Engineering, Rutgers The State University of New Jersey, Piscataway, NJ 08854, USA
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  • For correspondence: shishir.chundawat@rutgers.edu
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Abstract

Real-time azide or azido-functionalized molecular detection inside living cells using bioorthogonal chemistry-based approaches has been revolutionary to advancing chemical-biology. These methods have enabled diverse applications ranging from understanding the role of cellular glycosylation pathways, identifying diseased cells, and targeting delivery of azido-based therapeutic drugs. However, while classical techniques were applicable only to in-vitro detection of such functional groups, even recent bioorthogonal based-detection methods require expensive sensing reagents and also cannot selectively identify inorganic azide. Here, we report an in-vivo synthetic promoter based azide biosensor toolkit to selectively detect azide anions. A promiscuous cyanate-specific promoter was engineered to detect azide and rapidly induce expression of green fluorescent protein (GFP) in Escherichia coli. Our synthetic azide operon allows highly-tunable GFP expression, outperforming the classic lac-operon, and also offers an alternative low-cost protein expression system. Finally, we showcase the utility of this toolkit for in-vivo bioorthogonal reaction biosensing and glycoengineering based applications.

Competing Interest Statement

CKB and SPSC have a US provisional patent application filed by Rutgers University on June 30th 2020

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted July 09, 2020.
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Synthetic promoter based azide biosensor toolkit to advance chemical-biology
Chandra Kanth Bandi, Kyle S. Skalenko, Ayushi Agrawal, Neelan Sivaneri, Margaux Thiry, Shishir P.S. Chundawat
bioRxiv 2020.07.08.193060; doi: https://doi.org/10.1101/2020.07.08.193060
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Synthetic promoter based azide biosensor toolkit to advance chemical-biology
Chandra Kanth Bandi, Kyle S. Skalenko, Ayushi Agrawal, Neelan Sivaneri, Margaux Thiry, Shishir P.S. Chundawat
bioRxiv 2020.07.08.193060; doi: https://doi.org/10.1101/2020.07.08.193060

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