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RefPlantNLR: a comprehensive collection of experimentally validated plant NLRs

View ORCID ProfileJiorgos Kourelis, View ORCID ProfileSophien Kamoun
doi: https://doi.org/10.1101/2020.07.08.193961
Jiorgos Kourelis
The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, NR4 7UH, Norwich, UK
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  • ORCID record for Jiorgos Kourelis
Sophien Kamoun
The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, NR4 7UH, Norwich, UK
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  • For correspondence: sophien.kamoun@tsl.ac.uk
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ABSTRACT

Reference datasets are critical in computational biology. They help define canonical biological features and are essential for benchmarking studies. Here, we describe a comprehensive reference dataset of experimentally validated plant NLR immune receptors. RefPlantNLR consists of 415 NLRs from 31 genera belonging to 11 orders of flowering plants. We used RefPlantNLR to determine the canonical features of functionally validated plant NLRs. This reference dataset should prove useful for benchmarking NLR annotation tools, guiding comparative analyses of NLRs across the wide spectrum of plant diversity and identifying under-studied taxa. We hope that the RefPlantNLR resource will contribute to moving the field beyond a uniform view of NLR structure and function.

Competing Interest Statement

The authors receive funding from industry on NLR biology.

Footnotes

  • http://doi.org/10.5281/zenodo.3936022

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted July 09, 2020.
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RefPlantNLR: a comprehensive collection of experimentally validated plant NLRs
Jiorgos Kourelis, Sophien Kamoun
bioRxiv 2020.07.08.193961; doi: https://doi.org/10.1101/2020.07.08.193961
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RefPlantNLR: a comprehensive collection of experimentally validated plant NLRs
Jiorgos Kourelis, Sophien Kamoun
bioRxiv 2020.07.08.193961; doi: https://doi.org/10.1101/2020.07.08.193961

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