Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

GRIDSS2: harnessing the power of phasing and single breakends in somatic structural variant detection

View ORCID ProfileDaniel L. Cameron, Jonathan Baber, Charles Shale, Jose Espejo Valle-Inclan, Nicolle Besselink, View ORCID ProfileEdwin Cuppen, View ORCID ProfilePeter Priestley, View ORCID ProfileAnthony T. Papenfuss
doi: https://doi.org/10.1101/2020.07.09.196527
Daniel L. Cameron
1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Australia
2Hartwig Medical Foundation Australia, Sydney, Australia
5Department of Medical Biology, University of Melbourne, Australia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Daniel L. Cameron
  • For correspondence: papenfuss@wehi.edu.au cameron.d@wehi.edu.au
Jonathan Baber
2Hartwig Medical Foundation Australia, Sydney, Australia
3Hartwig Medical Foundation, Science Park 408, Amsterdam, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Charles Shale
2Hartwig Medical Foundation Australia, Sydney, Australia
3Hartwig Medical Foundation, Science Park 408, Amsterdam, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jose Espejo Valle-Inclan
4Center for Molecular Medicine and Oncode Institute, University Medical Center Utrecht, Heidelberglaan 100, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Nicolle Besselink
4Center for Molecular Medicine and Oncode Institute, University Medical Center Utrecht, Heidelberglaan 100, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Edwin Cuppen
3Hartwig Medical Foundation, Science Park 408, Amsterdam, The Netherlands
4Center for Molecular Medicine and Oncode Institute, University Medical Center Utrecht, Heidelberglaan 100, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Edwin Cuppen
Peter Priestley
2Hartwig Medical Foundation Australia, Sydney, Australia
3Hartwig Medical Foundation, Science Park 408, Amsterdam, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Peter Priestley
Anthony T. Papenfuss
1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Australia
5Department of Medical Biology, University of Melbourne, Australia
6Peter MacCallum Cancer Centre, Melbourne, Australia
7Sir Peter MacCallum Department of Oncology, University of Melbourne, Australia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Anthony T. Papenfuss
  • For correspondence: papenfuss@wehi.edu.au cameron.d@wehi.edu.au
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Data/Code
  • Preview PDF
Loading

Article Information

doi 
https://doi.org/10.1101/2020.07.09.196527
History 
  • July 10, 2020.

Article Versions

  • You are currently viewing Version 1 of this article (July 10, 2020 - 15:49).
  • View Version 2, the most recent version of this article.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.

Author Information

  1. Daniel L. Cameron1,2,5,#,
  2. Jonathan Baber2,3,
  3. Charles Shale2,3,
  4. Jose Espejo Valle-Inclan4,
  5. Nicolle Besselink4,
  6. Edwin Cuppen3,4,
  7. Peter Priestley2,3 and
  8. Anthony T. Papenfuss1,5,6,7,#
  1. 1Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Australia
  2. 2Hartwig Medical Foundation Australia, Sydney, Australia
  3. 3Hartwig Medical Foundation, Science Park 408, Amsterdam, The Netherlands
  4. 4Center for Molecular Medicine and Oncode Institute, University Medical Center Utrecht, Heidelberglaan 100, Utrecht, The Netherlands
  5. 5Department of Medical Biology, University of Melbourne, Australia
  6. 6Peter MacCallum Cancer Centre, Melbourne, Australia
  7. 7Sir Peter MacCallum Department of Oncology, University of Melbourne, Australia
  1. ↵#Correspondence: Anthony T. Papenfuss (papenfuss{at}wehi.edu.au) and Daniel Cameron (cameron.d{at}wehi.edu.au)
Back to top
PreviousNext
Posted July 10, 2020.
Download PDF
Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
GRIDSS2: harnessing the power of phasing and single breakends in somatic structural variant detection
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
GRIDSS2: harnessing the power of phasing and single breakends in somatic structural variant detection
Daniel L. Cameron, Jonathan Baber, Charles Shale, Jose Espejo Valle-Inclan, Nicolle Besselink, Edwin Cuppen, Peter Priestley, Anthony T. Papenfuss
bioRxiv 2020.07.09.196527; doi: https://doi.org/10.1101/2020.07.09.196527
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
GRIDSS2: harnessing the power of phasing and single breakends in somatic structural variant detection
Daniel L. Cameron, Jonathan Baber, Charles Shale, Jose Espejo Valle-Inclan, Nicolle Besselink, Edwin Cuppen, Peter Priestley, Anthony T. Papenfuss
bioRxiv 2020.07.09.196527; doi: https://doi.org/10.1101/2020.07.09.196527

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioinformatics
Subject Areas
All Articles
  • Animal Behavior and Cognition (3686)
  • Biochemistry (7774)
  • Bioengineering (5668)
  • Bioinformatics (21245)
  • Biophysics (10563)
  • Cancer Biology (8162)
  • Cell Biology (11915)
  • Clinical Trials (138)
  • Developmental Biology (6738)
  • Ecology (10388)
  • Epidemiology (2065)
  • Evolutionary Biology (13843)
  • Genetics (9694)
  • Genomics (13056)
  • Immunology (8123)
  • Microbiology (19956)
  • Molecular Biology (7833)
  • Neuroscience (42973)
  • Paleontology (318)
  • Pathology (1276)
  • Pharmacology and Toxicology (2256)
  • Physiology (3350)
  • Plant Biology (7208)
  • Scientific Communication and Education (1309)
  • Synthetic Biology (1999)
  • Systems Biology (5528)
  • Zoology (1126)