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A CRISPR-based genome-wide screen for adipogenesis reveals new insights into mitotic expansion and lipogenesis

View ORCID ProfileKeren I. Hilgendorf, Carl T. Johnson, Kyuho Han, Atefeh Rabiee, Janos Demeter, Ran Cheng, Yingdi Zhu, Zewen Jiang, Katrin J. Svensson, Michael C. Bassik, Peter K. Jackson
doi: https://doi.org/10.1101/2020.07.13.201038
Keren I. Hilgendorf
1Baxter Laboratory, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA
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  • ORCID record for Keren I. Hilgendorf
Carl T. Johnson
1Baxter Laboratory, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA
3Department of Medicine, Stem Cell and Regenerative Medicine Program, Stanford University School of Medicine, Stanford, CA 94305, USA
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Kyuho Han
4Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
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Atefeh Rabiee
1Baxter Laboratory, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA
5Department of Chemical and Systems Biology, Stanford University, Stanford, CA 94305, USA
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Janos Demeter
1Baxter Laboratory, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA
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Ran Cheng
1Baxter Laboratory, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA
6Department of Biology, Stanford University, Stanford, CA 94305, USA
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Yingdi Zhu
7Laboratory of Physical and Analytical Electrochemistry (LEPA), Ecole Polytechnique Fédérale de Lausanne (EPFL) Valais Wallis, Rue de l’Industrie 17, 1950 Sion, Switzerland
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Zewen Jiang
8Department of Pathology, Stanford University, Stanford, CA 94305, USA
9Stanford Diabetes Research Center, Stanford University School of Medicine, Stanford, CA, 94305, USA
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Katrin J. Svensson
8Department of Pathology, Stanford University, Stanford, CA 94305, USA
9Stanford Diabetes Research Center, Stanford University School of Medicine, Stanford, CA, 94305, USA
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Michael C. Bassik
4Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
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Peter K. Jackson
1Baxter Laboratory, Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA
8Department of Pathology, Stanford University, Stanford, CA 94305, USA
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  • For correspondence: pjackson@stanford.edu
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Summary

In response to excess nutrients, white adipose tissue expands by both generating new adipocytes and by upregulating lipogenesis in existing adipocytes. Here, we performed a genome-wide functional genomics screen to identify regulators of adipogenesis in the mouse 3T3-L1 cell model. The pooled screening strategy utilized FACS to isolate populations based on lipid content by gating for fluorescence intensity of the lipophilic, green fluorescent BODIPY 493/503 dye. Additionally, this approach categorized if genes functioned during mitotic expansion or lipogenesis. Cellular mechanisms regulating the rates of protein translation and protein stability were found to be critical for adipogenesis and lipogenesis. These mechanisms were further supported by proteomic analyses, which demonstrated that many changes in protein abundance during 3T3-L1 adipogenesis were not driven by transcription. Within these themes, we illustrate that hypusination is critical for translating adipogenic inducers of mitotic expansion and that the neddylation/ubiquitin pathway modulates insulin sensitivity to regulate lipogenesis.

Competing Interest Statement

The authors have declared no competing interest.

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Posted July 14, 2020.
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A CRISPR-based genome-wide screen for adipogenesis reveals new insights into mitotic expansion and lipogenesis
Keren I. Hilgendorf, Carl T. Johnson, Kyuho Han, Atefeh Rabiee, Janos Demeter, Ran Cheng, Yingdi Zhu, Zewen Jiang, Katrin J. Svensson, Michael C. Bassik, Peter K. Jackson
bioRxiv 2020.07.13.201038; doi: https://doi.org/10.1101/2020.07.13.201038
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A CRISPR-based genome-wide screen for adipogenesis reveals new insights into mitotic expansion and lipogenesis
Keren I. Hilgendorf, Carl T. Johnson, Kyuho Han, Atefeh Rabiee, Janos Demeter, Ran Cheng, Yingdi Zhu, Zewen Jiang, Katrin J. Svensson, Michael C. Bassik, Peter K. Jackson
bioRxiv 2020.07.13.201038; doi: https://doi.org/10.1101/2020.07.13.201038

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