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SARS-CoV-2 Infection Depends on Cellular Heparan Sulfate and ACE2

Thomas Mandel Clausen, Daniel R. Sandoval, Charlotte B. Spliid, Jessica Pihl, Chelsea D. Painter, Bryan E. Thacker, Charles A. Glass, Anoop Narayanan, Sydney A. Majowicz, Yang Zhang, Jonathan L. Torres, Gregory J. Golden, Ryan Porell, Aaron F. Garretson, Logan Laubach, Jared Feldman, View ORCID ProfileXin Yin, Yuan Pu, Blake Hauser, Timothy M. Caradonna, Benjamin P. Kellman, Cameron Martino, Philip L.S.M. Gordts, Sandra L. Leibel, Summit K. Chanda, Aaron G. Schmidt, Kamil Godula, Joyce Jose, Kevin D. Corbett, View ORCID ProfileAndrew B. Ward, Aaron F. Carlin, View ORCID ProfileJeffrey D. Esko
doi: https://doi.org/10.1101/2020.07.14.201616
Thomas Mandel Clausen
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA
2Department for Immunology and Microbiology, Faculty of Health and Medical Sciences, University of Copenhagen and Department of Infectious Disease, Copenhagen University Hospital, 2200 Copenhagen, Denmark
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  • For correspondence: jesko@health.ucsd.edu tmandelclausen@health.ucsd.edu
Daniel R. Sandoval
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA
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Charlotte B. Spliid
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA
2Department for Immunology and Microbiology, Faculty of Health and Medical Sciences, University of Copenhagen and Department of Infectious Disease, Copenhagen University Hospital, 2200 Copenhagen, Denmark
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Jessica Pihl
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA
2Department for Immunology and Microbiology, Faculty of Health and Medical Sciences, University of Copenhagen and Department of Infectious Disease, Copenhagen University Hospital, 2200 Copenhagen, Denmark
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Chelsea D. Painter
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA
3Biomedical Sciences Graduate Program, University of California San Diego, La Jolla, California, USA
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Bryan E. Thacker
4TEGA Therapeutics, Inc., 3550 General Atomics Court, G02-102, San Diego, CA 92121, USA
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Charles A. Glass
4TEGA Therapeutics, Inc., 3550 General Atomics Court, G02-102, San Diego, CA 92121, USA
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Anoop Narayanan
5Department of Biochemistry and Molecular Biology, The Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA, 16802, USA
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Sydney A. Majowicz
5Department of Biochemistry and Molecular Biology, The Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA, 16802, USA
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Yang Zhang
6Copenhagen Center for Glycomics, Department of Molecular and Cellular Medicine, University of Copenhagen, 2200 Copenhagen, Denmark
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Jonathan L. Torres
7Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
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Gregory J. Golden
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA
3Biomedical Sciences Graduate Program, University of California San Diego, La Jolla, California, USA
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Ryan Porell
8Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA
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Aaron F. Garretson
9Department of Medicine, University of California, San Diego, La Jolla, CA 92037, USA
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Logan Laubach
8Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA
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Jared Feldman
10Ragon Institute of MGH, MIT and Harvard, Cambridge MA 02139, USA
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Xin Yin
11Immunity and Pathogenesis Program, Infectious and Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
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Yuan Pu
11Immunity and Pathogenesis Program, Infectious and Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
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Blake Hauser
10Ragon Institute of MGH, MIT and Harvard, Cambridge MA 02139, USA
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Timothy M. Caradonna
10Ragon Institute of MGH, MIT and Harvard, Cambridge MA 02139, USA
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Benjamin P. Kellman
12Department of Bioengineering, University of California, San Diego.
13Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA 92093, USA
14Bioinformatics and Systems Biology Program, University of California, San Diego, La Jolla, CA 92093, USA
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Cameron Martino
12Department of Bioengineering, University of California, San Diego.
13Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA 92093, USA
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Philip L.S.M. Gordts
9Department of Medicine, University of California, San Diego, La Jolla, CA 92037, USA
16Glycobiology Research and Training Center, University of California, San Diego, La Jolla, CA 92093, USA
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Sandra L. Leibel
13Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA 92093, USA
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Summit K. Chanda
11Immunity and Pathogenesis Program, Infectious and Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
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Aaron G. Schmidt
10Ragon Institute of MGH, MIT and Harvard, Cambridge MA 02139, USA
15Department of Microbiology, Harvard Medical School, Boston, MA, 02115 USA
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Kamil Godula
8Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA
16Glycobiology Research and Training Center, University of California, San Diego, La Jolla, CA 92093, USA
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Joyce Jose
5Department of Biochemistry and Molecular Biology, The Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA, 16802, USA
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Kevin D. Corbett
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA
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Andrew B. Ward
7Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
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Aaron F. Carlin
9Department of Medicine, University of California, San Diego, La Jolla, CA 92037, USA
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Jeffrey D. Esko
1Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093, USA
16Glycobiology Research and Training Center, University of California, San Diego, La Jolla, CA 92093, USA
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  • ORCID record for Jeffrey D. Esko
  • For correspondence: jesko@health.ucsd.edu tmandelclausen@health.ucsd.edu
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Abstract

We show that SARS-CoV-2 spike protein interacts with cell surface heparan sulfate and angiotensin converting enzyme 2 (ACE2) through its Receptor Binding Domain. Docking studies suggest a putative heparin/heparan sulfate-binding site adjacent to the domain that binds to ACE2. In vitro, binding of ACE2 and heparin to spike protein ectodomains occurs independently and a ternary complex can be generated using heparin as a template. Contrary to studies with purified components, spike protein binding to heparan sulfate and ACE2 on cells occurs codependently. Unfractionated heparin, non-anticoagulant heparin, treatment with heparin lyases, and purified lung heparan sulfate potently block spike protein binding and infection by spike protein-pseudotyped virus and SARS-CoV-2 virus. These findings support a model for SARS-CoV-2 infection in which viral attachment and infection involves formation of a complex between heparan sulfate and ACE2. Manipulation of heparan sulfate or inhibition of viral adhesion by exogenous heparin may represent new therapeutic opportunities.

Competing Interest Statement

J.D.E. is a co-founder of TEGA Therapeutics. J.D.E. and The Regents of the University of California have licensed a University invention to and have an equity interest in TEGA Therapeutics. The terms of this arrangement have been reviewed and approved by the University of California, San Diego in accordance with its conflict of interest policies. C.A.G and B.E.T are employees of TEGA Therapeutics.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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SARS-CoV-2 Infection Depends on Cellular Heparan Sulfate and ACE2
Thomas Mandel Clausen, Daniel R. Sandoval, Charlotte B. Spliid, Jessica Pihl, Chelsea D. Painter, Bryan E. Thacker, Charles A. Glass, Anoop Narayanan, Sydney A. Majowicz, Yang Zhang, Jonathan L. Torres, Gregory J. Golden, Ryan Porell, Aaron F. Garretson, Logan Laubach, Jared Feldman, Xin Yin, Yuan Pu, Blake Hauser, Timothy M. Caradonna, Benjamin P. Kellman, Cameron Martino, Philip L.S.M. Gordts, Sandra L. Leibel, Summit K. Chanda, Aaron G. Schmidt, Kamil Godula, Joyce Jose, Kevin D. Corbett, Andrew B. Ward, Aaron F. Carlin, Jeffrey D. Esko
bioRxiv 2020.07.14.201616; doi: https://doi.org/10.1101/2020.07.14.201616
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SARS-CoV-2 Infection Depends on Cellular Heparan Sulfate and ACE2
Thomas Mandel Clausen, Daniel R. Sandoval, Charlotte B. Spliid, Jessica Pihl, Chelsea D. Painter, Bryan E. Thacker, Charles A. Glass, Anoop Narayanan, Sydney A. Majowicz, Yang Zhang, Jonathan L. Torres, Gregory J. Golden, Ryan Porell, Aaron F. Garretson, Logan Laubach, Jared Feldman, Xin Yin, Yuan Pu, Blake Hauser, Timothy M. Caradonna, Benjamin P. Kellman, Cameron Martino, Philip L.S.M. Gordts, Sandra L. Leibel, Summit K. Chanda, Aaron G. Schmidt, Kamil Godula, Joyce Jose, Kevin D. Corbett, Andrew B. Ward, Aaron F. Carlin, Jeffrey D. Esko
bioRxiv 2020.07.14.201616; doi: https://doi.org/10.1101/2020.07.14.201616

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