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The pioneer factor GAF is essential for zygotic genome activation and chromatin accessibility in the early Drosophila embryo

View ORCID ProfileMarissa M. Gaskill, View ORCID ProfileTyler J. Gibson, View ORCID ProfileElizabeth D. Larson, View ORCID ProfileMelissa M. Harrison
doi: https://doi.org/10.1101/2020.07.15.204248
Marissa M. Gaskill
Department of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, WI
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Tyler J. Gibson
Department of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, WI
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Elizabeth D. Larson
Department of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, WI
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Melissa M. Harrison
Department of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, WI
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  • ORCID record for Melissa M. Harrison
  • For correspondence: mharrison3@wisc.edu
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Abstract

Following fertilization, the genomes of the germ cells are reprogrammed to form the totipotent embryo. Pioneer transcription factors are required for remodeling the chromatin and driving the initial wave of zygotic gene expression. In Drosophila melanogaster, the pioneer factor Zelda is essential for development through this dramatic period of reprogramming, known as the maternal- to-zygotic transition (MZT). However, it was unknown whether additional pioneer factors were necessary for this transition. We identified an additional maternally encoded factor required for development through the MZT, GAGA Factor (GAF). GAF is needed to activate widespread zygotic transcription and to remodel the chromatin accessibility landscape. We demonstrated that Zelda preferentially controls expression of the earliest transcribed genes, while genes expressed during widespread activation are predominantly dependent on GAF. Thus, progression through the MZT requires coordination of multiple pioneer factors, and we propose that as development proceeds transcriptional control is gradually transferred from Zelda to GAF.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted July 15, 2020.
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The pioneer factor GAF is essential for zygotic genome activation and chromatin accessibility in the early Drosophila embryo
Marissa M. Gaskill, Tyler J. Gibson, Elizabeth D. Larson, Melissa M. Harrison
bioRxiv 2020.07.15.204248; doi: https://doi.org/10.1101/2020.07.15.204248
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The pioneer factor GAF is essential for zygotic genome activation and chromatin accessibility in the early Drosophila embryo
Marissa M. Gaskill, Tyler J. Gibson, Elizabeth D. Larson, Melissa M. Harrison
bioRxiv 2020.07.15.204248; doi: https://doi.org/10.1101/2020.07.15.204248

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