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Application of deep neural network reveals novel effects of maternal pre-conception exposure to nicotine on rat pup behavior

Reza Torabi, Serena Jenkins, Allonna Harker, Ian Q. Whishaw, Robbin Gibb, Artur Luczak
doi: https://doi.org/10.1101/2020.07.16.206961
Reza Torabi
Canadian Center for Behavioural Neuroscience, University of Lethbridge, 4401 University dr., Lethbridge, AB, Canada
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Serena Jenkins
Canadian Center for Behavioural Neuroscience, University of Lethbridge, 4401 University dr., Lethbridge, AB, Canada
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Allonna Harker
Canadian Center for Behavioural Neuroscience, University of Lethbridge, 4401 University dr., Lethbridge, AB, Canada
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Ian Q. Whishaw
Canadian Center for Behavioural Neuroscience, University of Lethbridge, 4401 University dr., Lethbridge, AB, Canada
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Robbin Gibb
Canadian Center for Behavioural Neuroscience, University of Lethbridge, 4401 University dr., Lethbridge, AB, Canada
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Artur Luczak
Canadian Center for Behavioural Neuroscience, University of Lethbridge, 4401 University dr., Lethbridge, AB, Canada
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  • For correspondence: Luczak@uleth.ca
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Abstract

We present a deep neural network for data-driven analyses of infant rat behavior in an open field task. The network was applied to study the effect of maternal nicotine exposure prior to conception on offspring motor development. The neural network outperformed human expert designed animal locomotion measures in distinguishing rat pups born to nicotine exposed dams versus control dams. Notably, the network discovered novel movement alterations in posture, movement initiation and a stereotypy in “warm-up” behavior (the initiation of movement along specific dimensions) that were predictive of nicotine exposure. The results suggest that maternal preconception nicotine exposure delays and alters offspring motor development. In summary, we demonstrated that a deep neural network can automatically assess animal behavior with high accuracy, and that it offers a data-driven approach to investigating pharmacological effects on brain development.

Significance Relating neuronal activity to behavior is crucial to understand brain function. Despite the staggering progress in monitoring brain activity, behavioral analyses still do not differ much from methods developed 30-50 years ago. The reason for that is the difficulty for automated video analyses to detect small differences in complex movements. Here we show that applying deep neuronal networks for automated video analyses can help to solve this problem. More importantly, knowledge extracted from the network allowed to identify subtle changes in multiple behavioral components, which were caused by maternal preconception nicotine exposure in rat pups. Thus, the examples presented here show how neuronal networks can guide the development of more accurate behavioral tests to assess symptoms of neurological disorders.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://github.com/rezatorabi13/Behaviour_Recognizer

  • Abbreviations

    MPNE
    maternal preconception nicotine exposure
  • Copyright 
    The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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    Posted December 15, 2020.
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    Application of deep neural network reveals novel effects of maternal pre-conception exposure to nicotine on rat pup behavior
    Reza Torabi, Serena Jenkins, Allonna Harker, Ian Q. Whishaw, Robbin Gibb, Artur Luczak
    bioRxiv 2020.07.16.206961; doi: https://doi.org/10.1101/2020.07.16.206961
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    Application of deep neural network reveals novel effects of maternal pre-conception exposure to nicotine on rat pup behavior
    Reza Torabi, Serena Jenkins, Allonna Harker, Ian Q. Whishaw, Robbin Gibb, Artur Luczak
    bioRxiv 2020.07.16.206961; doi: https://doi.org/10.1101/2020.07.16.206961

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