Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

How many sirtuin genes are out there? evolution of sirtuin genes in vertebrates with a description of a new family member

View ORCID ProfileJuan C. Opazo, View ORCID ProfileMichael W. Vandewege, View ORCID ProfileFederico G. Hoffmann, Kattina Zavala, View ORCID ProfileCatalina Meléndez, View ORCID ProfileCharlotte Luchsinger, View ORCID ProfileViviana A. Cavieres, View ORCID ProfileLuis Vargas-Chacoff, View ORCID ProfileFrancisco J. Morera, View ORCID ProfilePatricia V. Burgos, View ORCID ProfileCheril Tapia-Rojas, View ORCID ProfileGonzalo A. Mardones
doi: https://doi.org/10.1101/2020.07.17.209510
Juan C. Opazo
1Integrative Biology Group, Universidad Austral de Chile, Valdivia, Chile
2Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
3Millennium Nucleus of Ion Channel-Associated Diseases (MiNICAD), Valdivia, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Juan C. Opazo
  • For correspondence: jopazo@gmail.com gonzalo.mardones@uach.cl
Michael W. Vandewege
4Department of Biology, Eastern New Mexico University, Portales, New Mexico, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Michael W. Vandewege
Federico G. Hoffmann
5Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University, Starkville, Mississippi, USA
6Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Starkville, Mississippi, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Federico G. Hoffmann
Kattina Zavala
2Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Catalina Meléndez
7Centro de Biología Celular y Biomedicina (CEBICEM), Facultad de Medicina y Ciencia, Universidad San Sebastián, Santiago, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Catalina Meléndez
Charlotte Luchsinger
8Department of Physiology, School of Medicine, Universidad Austral de Chile, Valdivia, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Charlotte Luchsinger
Viviana A. Cavieres
7Centro de Biología Celular y Biomedicina (CEBICEM), Facultad de Medicina y Ciencia, Universidad San Sebastián, Santiago, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Viviana A. Cavieres
Luis Vargas-Chacoff
1Integrative Biology Group, Universidad Austral de Chile, Valdivia, Chile
9Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Valdivia, Chile
10Centro Fondap de Investigación de Altas Latitudes (IDEAL), Universidad Austral de Chile, Valdivia, Chile
11Millennium Institute Biodiversity of Antarctic and Subantarctic Ecosystems, BASE, Universidad Austral de Chile, Valdivia, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Luis Vargas-Chacoff
Francisco J. Morera
1Integrative Biology Group, Universidad Austral de Chile, Valdivia, Chile
12Applied Biochemistry Laboratory, Facultad de Ciencias Veterinarias, Instituto de Farmacología y Morfofisiología, Universidad Austral de Chile, Valdivia, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Francisco J. Morera
Patricia V. Burgos
7Centro de Biología Celular y Biomedicina (CEBICEM), Facultad de Medicina y Ciencia, Universidad San Sebastián, Santiago, Chile
13Centro Ciencia & Vida, Fundación Ciencia & Vida, Santiago, Chile
14Centro de Envejecimiento y Regeneración (CARE-UC), Facultad de Ciencias Biológicas, Pontificia Universidad Católica, Santiago, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Patricia V. Burgos
Cheril Tapia-Rojas
7Centro de Biología Celular y Biomedicina (CEBICEM), Facultad de Medicina y Ciencia, Universidad San Sebastián, Santiago, Chile
13Centro Ciencia & Vida, Fundación Ciencia & Vida, Santiago, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Cheril Tapia-Rojas
Gonzalo A. Mardones
1Integrative Biology Group, Universidad Austral de Chile, Valdivia, Chile
8Department of Physiology, School of Medicine, Universidad Austral de Chile, Valdivia, Chile
15Center for Interdisciplinary Studies of the Nervous System (CISNe), Universidad Austral de Chile, Valdivia, Chile
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Gonzalo A. Mardones
  • For correspondence: jopazo@gmail.com gonzalo.mardones@uach.cl
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Data/Code
  • Preview PDF
Loading

Abstract

Studying the evolutionary history of gene families is a challenging and exciting task with a wide range of implications. In addition to exploring fundamental questions about the origin and evolution of genes, disentangling their evolution is also critical to those who do functional/structural studies to allow a deeper and more precise interpretation of their results in an evolutionary context. The sirtuin gene family is a group of genes that are involved in a variety of biological functions mostly related to aging. Their duplicative history is an open question, as well as the definition of the repertoire of sirtuin genes among vertebrates. Our results show a well-resolved phylogeny that represents an improvement in our understanding of the duplicative history of the sirtuin gene family. We identified a new sirtuin family member (SIRT3-like) that was apparently lost in the last common ancestor of amniotes, but retained in all other groups of jawed vertebrates. According to our experimental analyses, elephant shark SIRT3-like protein is located in mitochondria, the overexpression of which leads to an increase in cellular levels of ATP. Moreover, in vitro analysis demonstrated it has deacetylase activity being modulated in a similar way to mammalian SIRT3. Our results indicate that there are at least eight sirtuin paralogs among vertebrates and that all of them can be traced back to the last common ancestor of the group that existed between 676 and 615 millions of years ago.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • We included more evidence describing the new gene family member

  • https://zenodo.org/record/3951138#.XxNUw5NKjUI

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
Back to top
PreviousNext
Posted May 11, 2022.
Download PDF
Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
How many sirtuin genes are out there? evolution of sirtuin genes in vertebrates with a description of a new family member
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
How many sirtuin genes are out there? evolution of sirtuin genes in vertebrates with a description of a new family member
Juan C. Opazo, Michael W. Vandewege, Federico G. Hoffmann, Kattina Zavala, Catalina Meléndez, Charlotte Luchsinger, Viviana A. Cavieres, Luis Vargas-Chacoff, Francisco J. Morera, Patricia V. Burgos, Cheril Tapia-Rojas, Gonzalo A. Mardones
bioRxiv 2020.07.17.209510; doi: https://doi.org/10.1101/2020.07.17.209510
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
How many sirtuin genes are out there? evolution of sirtuin genes in vertebrates with a description of a new family member
Juan C. Opazo, Michael W. Vandewege, Federico G. Hoffmann, Kattina Zavala, Catalina Meléndez, Charlotte Luchsinger, Viviana A. Cavieres, Luis Vargas-Chacoff, Francisco J. Morera, Patricia V. Burgos, Cheril Tapia-Rojas, Gonzalo A. Mardones
bioRxiv 2020.07.17.209510; doi: https://doi.org/10.1101/2020.07.17.209510

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Evolutionary Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (3514)
  • Biochemistry (7367)
  • Bioengineering (5347)
  • Bioinformatics (20326)
  • Biophysics (10046)
  • Cancer Biology (7777)
  • Cell Biology (11353)
  • Clinical Trials (138)
  • Developmental Biology (6453)
  • Ecology (9980)
  • Epidemiology (2065)
  • Evolutionary Biology (13357)
  • Genetics (9373)
  • Genomics (12614)
  • Immunology (7725)
  • Microbiology (19104)
  • Molecular Biology (7465)
  • Neuroscience (41153)
  • Paleontology (301)
  • Pathology (1235)
  • Pharmacology and Toxicology (2142)
  • Physiology (3180)
  • Plant Biology (6880)
  • Scientific Communication and Education (1276)
  • Synthetic Biology (1900)
  • Systems Biology (5328)
  • Zoology (1091)