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A semi-automated intestinal organoid screening method demonstrates epigenetic control of epithelial maturation

View ORCID ProfileJenny Ostrop, View ORCID ProfileRosalie Zwiggelaar, View ORCID ProfileMarianne Terndrup Pedersen, View ORCID ProfileFrançois Gerbe, View ORCID ProfileKorbinian Bösl, View ORCID ProfileHåvard T. Lindholm, View ORCID ProfileAlberto Díez-Sánchez, Naveen Parmar, View ORCID ProfileSilke Radetzki, Jens Peter von Kries, View ORCID ProfilePhilippe Jay, Kim B. Jensen, View ORCID ProfileCheryl Arrowsmith, View ORCID ProfileMenno J. Oudhoff
doi: https://doi.org/10.1101/2020.07.23.217414
Jenny Ostrop
1CEMIR – Centre of Molecular Inflammation Research, Department of Clinical and Molecular Medicine, NTNU – Norwegian University of Science and Technology, Trondheim, Norway
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  • For correspondence: menno.oudhoff@ntnu.no jenny.ostrop@ntnu.no
Rosalie Zwiggelaar
1CEMIR – Centre of Molecular Inflammation Research, Department of Clinical and Molecular Medicine, NTNU – Norwegian University of Science and Technology, Trondheim, Norway
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  • ORCID record for Rosalie Zwiggelaar
Marianne Terndrup Pedersen
2BRIC - Biotech Research and Innovation Centre, University of Copenhagen, Copenhagen N, Denmark
3Novo Nordisk Foundation Center for Stem Cell Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen N, Denmark
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François Gerbe
4Cancer Biology Department, Institute of Functional Genomics, University of Montpellier, France
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Korbinian Bösl
5Computational Biological Unit, Department of Informatics, University of Bergen, Norway
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Håvard T. Lindholm
1CEMIR – Centre of Molecular Inflammation Research, Department of Clinical and Molecular Medicine, NTNU – Norwegian University of Science and Technology, Trondheim, Norway
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Alberto Díez-Sánchez
1CEMIR – Centre of Molecular Inflammation Research, Department of Clinical and Molecular Medicine, NTNU – Norwegian University of Science and Technology, Trondheim, Norway
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Naveen Parmar
1CEMIR – Centre of Molecular Inflammation Research, Department of Clinical and Molecular Medicine, NTNU – Norwegian University of Science and Technology, Trondheim, Norway
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Silke Radetzki
6Screening Unit, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany
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  • ORCID record for Silke Radetzki
Jens Peter von Kries
6Screening Unit, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany
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Philippe Jay
4Cancer Biology Department, Institute of Functional Genomics, University of Montpellier, France
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Kim B. Jensen
2BRIC - Biotech Research and Innovation Centre, University of Copenhagen, Copenhagen N, Denmark
3Novo Nordisk Foundation Center for Stem Cell Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen N, Denmark
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Cheryl Arrowsmith
7Structural Genomics Consortium, University of Toronto, Toronto, Canada
8Princess Margaret Cancer Centre, University Health Network, Toronto, Canada
9Department of Medical Biophysics, University of Toronto, Toronto, Canada
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Menno J. Oudhoff
1CEMIR – Centre of Molecular Inflammation Research, Department of Clinical and Molecular Medicine, NTNU – Norwegian University of Science and Technology, Trondheim, Norway
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  • For correspondence: menno.oudhoff@ntnu.no jenny.ostrop@ntnu.no
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Abstract

The intestinal epithelium maintains an important barrier throughout life. It consists of several epithelial cell lineages that are derived from LGR5+ intestinal stem cells. Although epigenetic regulation of embryonic stem cell differentiation is well established, its role in adult stem cell systems such as the intestinal epithelium is still undefined. Yet, targeting of epigenetic regulatory enzymes may be relevant for new therapeutics, for example in cancer treatment. Here, we combine a newly established organoid toolbox with an epigenetic probe library to identify epigenetic regulators of intestinal epithelial biology. We discover several probes that alter intestinal epithelial biology including those targeting HDACs, EP300/CREBBP, LSD1, and type I PRMTs. We conclude that epigenetic modifiers are primarily involved in mediating maturation of the epithelium rather than dictating specific cell lineage differentiation. Furthermore, we show that inhibiting type I PRMTs, which leads to epithelial maturation, blocks the growth of adenoma but not normal organoid cultures. Thus, epigenetic probes are a powerful tool in defining biological processes and demonstrate therapeutic potential.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted July 24, 2020.
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A semi-automated intestinal organoid screening method demonstrates epigenetic control of epithelial maturation
Jenny Ostrop, Rosalie Zwiggelaar, Marianne Terndrup Pedersen, François Gerbe, Korbinian Bösl, Håvard T. Lindholm, Alberto Díez-Sánchez, Naveen Parmar, Silke Radetzki, Jens Peter von Kries, Philippe Jay, Kim B. Jensen, Cheryl Arrowsmith, Menno J. Oudhoff
bioRxiv 2020.07.23.217414; doi: https://doi.org/10.1101/2020.07.23.217414
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A semi-automated intestinal organoid screening method demonstrates epigenetic control of epithelial maturation
Jenny Ostrop, Rosalie Zwiggelaar, Marianne Terndrup Pedersen, François Gerbe, Korbinian Bösl, Håvard T. Lindholm, Alberto Díez-Sánchez, Naveen Parmar, Silke Radetzki, Jens Peter von Kries, Philippe Jay, Kim B. Jensen, Cheryl Arrowsmith, Menno J. Oudhoff
bioRxiv 2020.07.23.217414; doi: https://doi.org/10.1101/2020.07.23.217414

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