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Immuno-informatics approach for multi-epitope vaccine designing against SARS-CoV-2

View ORCID ProfileSouvik Banerjee, Kaustav Majumder, Gerardo Jose Gutierrez, Debkishore Gupta, Bharti Mittal
doi: https://doi.org/10.1101/2020.07.23.218529
Souvik Banerjee
1Department of Microbiology, St. Xavier’s College (Autonomous), Kolkata
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  • For correspondence: souvik97kol@gmail.com
Kaustav Majumder
2Department of Biosciences and Bioengineering, Indian Institute of Technology, Bombay
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Gerardo Jose Gutierrez
3Department of Microbiology and Cell Science, University of Florida
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Debkishore Gupta
4Department of Clinical Microbiology and Infection Control, The Calcutta Medical Research Institute and BM Birla Heart Research Centre, Kolkata
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Bharti Mittal
5Immuniteit Labs Pvt Ltd, Bangalore
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Abstract

The novel Corona Virus Disease 2019 (COVID-19) pandemic has set the fatality rates ablaze across the world. So, to combat this disease, we have designed a multi-epitope vaccine from various proteins of Severe Acute Respiratory Syndrome Corona virus 2 (SARS-CoV-2) with an immuno-informatics approach, validated in silico to be stable, non-allergic and antigenic. Cytotoxic T-cell, helper T-cell, and B-cell epitopes were computationally predicted from six conserved protein sequences among four viral strains isolated across the world. The T-cell epitopes, overlapping with the B-cell epitopes, were included in the vaccine construct to assure the humoral and cell-mediated immune response. The beta-subunit of cholera toxin was added as an adjuvant at the N-terminal of the construct to increase immunogenicity. Interferon-gamma inducing epitopes were even predicted in the vaccine. Molecular docking and binding energetics studies revealed strong interactions of the vaccine with immune-stimulatory toll-like receptors (TLR) −2, 3, 4. Molecular dynamics simulation of the vaccine ensured in vivo stability in the biological system. The immune simulation of vaccine evinced elevated immune response. The efficient translation of the vaccine in an expression vector was assured utilizing in silico cloning approach. Certainly, such a vaccine construct could reliably be effective against COVID-19.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted August 18, 2020.
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Immuno-informatics approach for multi-epitope vaccine designing against SARS-CoV-2
Souvik Banerjee, Kaustav Majumder, Gerardo Jose Gutierrez, Debkishore Gupta, Bharti Mittal
bioRxiv 2020.07.23.218529; doi: https://doi.org/10.1101/2020.07.23.218529
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Immuno-informatics approach for multi-epitope vaccine designing against SARS-CoV-2
Souvik Banerjee, Kaustav Majumder, Gerardo Jose Gutierrez, Debkishore Gupta, Bharti Mittal
bioRxiv 2020.07.23.218529; doi: https://doi.org/10.1101/2020.07.23.218529

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