New Results
Benchmarking challenging small variants with linked and long reads
Justin Wagner, Nathan D Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stankovic, Vladimir Kovacevic, Aaron M Wenger, William J Rowell, Chunlin Xiao, Byunggil Yoo, Neil Miller, View ORCID ProfileJeffrey A Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael Schatz, View ORCID ProfileGiuseppe Narzisi, Marta Byrska-Bishop, Wayne Clarke, Uday S Evani, Charles Markello, Kishwar Shafin, View ORCID ProfileXin Zhou, View ORCID ProfileArend Sidow, Vikas Bansal, Peter Ebert, Tobias Marschall, Peter Lansdorp, Vincent Hanlon, Carl-Adam Mattsson, View ORCID ProfileAlvaro Martinez Barrio, Ian T Fiddes, Arkarachai Fungtammasan, Chen-Shan Chin, Fritz J Sedlazeck, Andrew Carroll, Marc Salit, Justin M Zook, Genome in a Bottle Consortium
doi: https://doi.org/10.1101/2020.07.24.212712
Justin Wagner
1 National Institute of Standards and Technology;
Nathan D Olson
1 National Institute of Standards and Technology;
Lindsay Harris
1 National Institute of Standards and Technology;
Ziad Khan
2 Baylor College of Medicine;
Jesse Farek
2 Baylor College of Medicine;
Medhat Mahmoud
2 Baylor College of Medicine;
Ana Stankovic
3 Seven Bridges;
Vladimir Kovacevic
4 University in Belgrade;
Aaron M Wenger
5 Pacific Biosciences;
William J Rowell
5 Pacific Biosciences;
Chunlin Xiao
6 National Center for Biotechnology Information;
Byunggil Yoo
7 Children's Mercy Kansas City;
Neil Miller
7 Children's Mercy Kansas City;
Jeffrey A Rosenfeld
8 Rutger Cancer Institute of NJ;
Bohan Ni
9 Johns Hopkins University;
Samantha Zarate
9 Johns Hopkins University;
Melanie Kirsche
9 Johns Hopkins University;
Sergey Aganezov
9 Johns Hopkins University;
Michael Schatz
9 Johns Hopkins University;
Giuseppe Narzisi
10 New York Genome Center;
Marta Byrska-Bishop
10 New York Genome Center;
Wayne Clarke
10 New York Genome Center;
Uday S Evani
10 New York Genome Center;
Charles Markello
11 University of California at Santa Cruz Genomics Institute;
Kishwar Shafin
11 University of California at Santa Cruz Genomics Institute;
Xin Zhou
12 Stanford University;
Arend Sidow
12 Stanford University;
Vikas Bansal
13 University of California San Diego;
Peter Ebert
14 Heinrich-Heine-University Dusseldorf, Medical Faculty, Institute of Medical Biometry and Bioinformatics, 40225 Dusseldorf, Germany;
Tobias Marschall
14 Heinrich-Heine-University Dusseldorf, Medical Faculty, Institute of Medical Biometry and Bioinformatics, 40225 Dusseldorf, Germany;
Peter Lansdorp
15 Terry Fox Laboratory, BC Cancer Research Institute and Department of Medical Genetics, University of British Columbia, Vancouver, Canada;
Vincent Hanlon
16 Terry Fox Laboratory, BC Cancer Research Institute, Vancouver, Canada;
Carl-Adam Mattsson
16 Terry Fox Laboratory, BC Cancer Research Institute, Vancouver, Canada;
Alvaro Martinez Barrio
17 10x Genomics;
Ian T Fiddes
17 10x Genomics;
Arkarachai Fungtammasan
18 DNAnexus;
Chen-Shan Chin
18 DNAnexus;
Fritz J Sedlazeck
2 Baylor College of Medicine;
Andrew Carroll
19 Google;
Marc Salit
20 Joint Initiative for Metrology in Biology;
Justin M Zook
1 National Institute of Standards and Technology;
21 -
Posted December 05, 2020.
Benchmarking challenging small variants with linked and long reads
Justin Wagner, Nathan D Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stankovic, Vladimir Kovacevic, Aaron M Wenger, William J Rowell, Chunlin Xiao, Byunggil Yoo, Neil Miller, Jeffrey A Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael Schatz, Giuseppe Narzisi, Marta Byrska-Bishop, Wayne Clarke, Uday S Evani, Charles Markello, Kishwar Shafin, Xin Zhou, Arend Sidow, Vikas Bansal, Peter Ebert, Tobias Marschall, Peter Lansdorp, Vincent Hanlon, Carl-Adam Mattsson, Alvaro Martinez Barrio, Ian T Fiddes, Arkarachai Fungtammasan, Chen-Shan Chin, Fritz J Sedlazeck, Andrew Carroll, Marc Salit, Justin M Zook, Genome in a Bottle Consortium
bioRxiv 2020.07.24.212712; doi: https://doi.org/10.1101/2020.07.24.212712
Benchmarking challenging small variants with linked and long reads
Justin Wagner, Nathan D Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud, Ana Stankovic, Vladimir Kovacevic, Aaron M Wenger, William J Rowell, Chunlin Xiao, Byunggil Yoo, Neil Miller, Jeffrey A Rosenfeld, Bohan Ni, Samantha Zarate, Melanie Kirsche, Sergey Aganezov, Michael Schatz, Giuseppe Narzisi, Marta Byrska-Bishop, Wayne Clarke, Uday S Evani, Charles Markello, Kishwar Shafin, Xin Zhou, Arend Sidow, Vikas Bansal, Peter Ebert, Tobias Marschall, Peter Lansdorp, Vincent Hanlon, Carl-Adam Mattsson, Alvaro Martinez Barrio, Ian T Fiddes, Arkarachai Fungtammasan, Chen-Shan Chin, Fritz J Sedlazeck, Andrew Carroll, Marc Salit, Justin M Zook, Genome in a Bottle Consortium
bioRxiv 2020.07.24.212712; doi: https://doi.org/10.1101/2020.07.24.212712
Subject Area
Subject Areas
- Biochemistry (11740)
- Bioengineering (8750)
- Bioinformatics (29189)
- Biophysics (14967)
- Cancer Biology (12093)
- Cell Biology (17410)
- Clinical Trials (138)
- Developmental Biology (9420)
- Ecology (14178)
- Epidemiology (2067)
- Evolutionary Biology (18301)
- Genetics (12239)
- Genomics (16797)
- Immunology (11865)
- Microbiology (28070)
- Molecular Biology (11583)
- Neuroscience (60953)
- Paleontology (451)
- Pathology (1870)
- Pharmacology and Toxicology (3238)
- Physiology (4957)
- Plant Biology (10425)
- Synthetic Biology (2884)
- Systems Biology (7338)
- Zoology (1651)