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Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes

Momoko Imakubo, View ORCID ProfileJun Takayama, Hatsumi Okada, View ORCID ProfileShuichi Onami
doi: https://doi.org/10.1101/2020.07.30.228270
Momoko Imakubo
1Department of Computational Science, Graduate School of System Informatics, Kobe University, Kobe, Hyogo 657-8501, Japan
2Laboratory for Developmental Dynamics, RIKEN Center for Biosystems Dynamics Research, Kobe, Hyogo 650-0047, Japan
3Laboratory for Developmental Dynamics, RIKEN Quantitative Biology Center, Kobe, Hyogo 650-0047, Japan
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Jun Takayama
3Laboratory for Developmental Dynamics, RIKEN Quantitative Biology Center, Kobe, Hyogo 650-0047, Japan
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Hatsumi Okada
2Laboratory for Developmental Dynamics, RIKEN Center for Biosystems Dynamics Research, Kobe, Hyogo 650-0047, Japan
3Laboratory for Developmental Dynamics, RIKEN Quantitative Biology Center, Kobe, Hyogo 650-0047, Japan
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Shuichi Onami
1Department of Computational Science, Graduate School of System Informatics, Kobe University, Kobe, Hyogo 657-8501, Japan
2Laboratory for Developmental Dynamics, RIKEN Center for Biosystems Dynamics Research, Kobe, Hyogo 650-0047, Japan
3Laboratory for Developmental Dynamics, RIKEN Quantitative Biology Center, Kobe, Hyogo 650-0047, Japan
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  • ORCID record for Shuichi Onami
  • For correspondence: sonami@riken.jp
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Abstract

Background Oocyte quality decreases with aging, thereby increasing errors in fertilization, chromosome segregation, and embryonic cleavage. Oocyte appearance also changes with aging, suggesting a functional relationship between oocyte quality and appearance. However, no methods are available to objectively quantify age-associated changes in oocyte appearance.

Results We show that statistical image processing of Nomarski differential interference contrast microscopy images can be used to quantify age-associated changes in Caenorhabditis elegans oocyte appearance. Max-min Value (mean difference between the maximum and minimum intensities within each moving window) quantitatively characterized the difference in oocyte cytoplasmic texture between 1- and 3-day-old adults (Day 1 and Day 3 oocytes, respectively). With an appropriate parameter set, the gray level co-occurrence matrix (GLCM)-based texture feature Correlation (COR) more sensitively characterized this difference than the Max-min Value. Manipulating the smoothness of and/or adding irregular structures to the cytoplasmic texture of Day 1 oocyte images reproduced the difference in Max-min Value but not in COR between Day 1 and Day 3 oocytes. Increasing the size of granules in synthetic images recapitulated the age-associated changes in COR. Manual measurements validated that the cytoplasmic granules in oocytes become larger with aging.

Conclusions The Max-min Value and COR objectively quantify age-related changes in C. elegans oocyte in Nomarski DIC microscopy images. Our methods provide new opportunities for understanding the mechanism underlying oocyte aging.

Competing Interest Statement

The authors have declared no competing interest.

  • Abbreviations

    GLCM
    Gray level co-occurrence matrix
    COR
    Correlation
    Mm Value
    Max-min Value
    DIC microscopy
    Differential interference contrast microscopy
    C. elegans
    Caenorhabditis elegans
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    Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes
    Momoko Imakubo, Jun Takayama, Hatsumi Okada, Shuichi Onami
    bioRxiv 2020.07.30.228270; doi: https://doi.org/10.1101/2020.07.30.228270
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    Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes
    Momoko Imakubo, Jun Takayama, Hatsumi Okada, Shuichi Onami
    bioRxiv 2020.07.30.228270; doi: https://doi.org/10.1101/2020.07.30.228270

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