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Multiplex-GAM: genome-wide identification of chromatin contacts yields insights not captured by Hi-C
View ORCID ProfileRobert A. Beagrie, View ORCID ProfileChristoph J. Thieme, View ORCID ProfileCarlo Annunziatella, Catherine Baugher, Yingnan Zhang, Markus Schueler, View ORCID ProfileAlexander Kukalev, View ORCID ProfileRieke Kempfer, View ORCID ProfileAndrea M. Chiariello, View ORCID ProfileSimona Bianco, View ORCID ProfileYichao Li, View ORCID ProfileAntonio Scialdone, Lonnie R. Welch, View ORCID ProfileMario Nicodemi, View ORCID ProfileAna Pombo
doi: https://doi.org/10.1101/2020.07.31.230284
Robert A. Beagrie
1Epigenetic Regulation and Chromatin Architecture Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany
2Laboratory of Gene Regulation, Weatherall Institute of Molecular Medicine, Oxford, OX39DU, UK
Christoph J. Thieme
1Epigenetic Regulation and Chromatin Architecture Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany
Carlo Annunziatella
3Dipartimento di Fisica, Università di Napoli Federico II, and INFN Napoli, CNR-SPIN, Complesso Universitario di Monte Sant’Angelo, 80126 Naples, Italy
Catherine Baugher
4School of Electrical Engineering and Computer Science, Ohio University, 45701 Athens, OH, USA
Yingnan Zhang
4School of Electrical Engineering and Computer Science, Ohio University, 45701 Athens, OH, USA
Markus Schueler
1Epigenetic Regulation and Chromatin Architecture Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany
Alexander Kukalev
1Epigenetic Regulation and Chromatin Architecture Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany
Rieke Kempfer
1Epigenetic Regulation and Chromatin Architecture Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany
Andrea M. Chiariello
3Dipartimento di Fisica, Università di Napoli Federico II, and INFN Napoli, CNR-SPIN, Complesso Universitario di Monte Sant’Angelo, 80126 Naples, Italy
Simona Bianco
1Epigenetic Regulation and Chromatin Architecture Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany
3Dipartimento di Fisica, Università di Napoli Federico II, and INFN Napoli, CNR-SPIN, Complesso Universitario di Monte Sant’Angelo, 80126 Naples, Italy
Yichao Li
4School of Electrical Engineering and Computer Science, Ohio University, 45701 Athens, OH, USA
Antonio Scialdone
5Institute of Epigenetics and Stem Cells, Helmholtz Zentrum München – German Research Center for Environmental Health, Munich, 81377, Germany
6Institute of Functional Epigenetics, Helmholtz Zentrum München – German Research Center for Environmental Health, Neuherberg, 85764, Germany
7Institute of Computational Biology, Helmholtz Zentrum München – German Research Center for Environmental Health, Neuherberg, 85764, Germany
Lonnie R. Welch
4School of Electrical Engineering and Computer Science, Ohio University, 45701 Athens, OH, USA
Mario Nicodemi
1Epigenetic Regulation and Chromatin Architecture Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany
3Dipartimento di Fisica, Università di Napoli Federico II, and INFN Napoli, CNR-SPIN, Complesso Universitario di Monte Sant’Angelo, 80126 Naples, Italy
8Berlin Institute of Health (BIH), MDC-Berlin, Berlin, Germany
Ana Pombo
1Epigenetic Regulation and Chromatin Architecture Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Hannoversche Str. 28, 10115 Berlin, Germany
8Berlin Institute of Health (BIH), MDC-Berlin, Berlin, Germany
9Humboldt-Universität zu Berlin, 10117 Berlin, Germany
Posted March 08, 2021.
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights not captured by Hi-C
Robert A. Beagrie, Christoph J. Thieme, Carlo Annunziatella, Catherine Baugher, Yingnan Zhang, Markus Schueler, Alexander Kukalev, Rieke Kempfer, Andrea M. Chiariello, Simona Bianco, Yichao Li, Antonio Scialdone, Lonnie R. Welch, Mario Nicodemi, Ana Pombo
bioRxiv 2020.07.31.230284; doi: https://doi.org/10.1101/2020.07.31.230284
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights not captured by Hi-C
Robert A. Beagrie, Christoph J. Thieme, Carlo Annunziatella, Catherine Baugher, Yingnan Zhang, Markus Schueler, Alexander Kukalev, Rieke Kempfer, Andrea M. Chiariello, Simona Bianco, Yichao Li, Antonio Scialdone, Lonnie R. Welch, Mario Nicodemi, Ana Pombo
bioRxiv 2020.07.31.230284; doi: https://doi.org/10.1101/2020.07.31.230284
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