Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Object manifold geometry across the mouse cortical visual hierarchy

View ORCID ProfileEmmanouil Froudarakis, View ORCID ProfileUri Cohen, View ORCID ProfileMaria Diamantaki, View ORCID ProfileEdgar Y. Walker, View ORCID ProfileJacob Reimer, View ORCID ProfilePhilipp Berens, View ORCID ProfileHaim Sompolinsky, View ORCID ProfileAndreas S. Tolias
doi: https://doi.org/10.1101/2020.08.20.258798
Emmanouil Froudarakis
1Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, Hellas, Heraklion, Greece
4Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
5Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Emmanouil Froudarakis
  • For correspondence: frouman@imbb.forth.gr astolias@bcm.edu
Uri Cohen
2Edmond and Lily Safra Center for Brain Sciences, Hebrew University of Jerusalem, Israel
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Uri Cohen
Maria Diamantaki
1Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, Hellas, Heraklion, Greece
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Maria Diamantaki
Edgar Y. Walker
4Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
5Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
6Institute for Ophthalmic Research, University of Tübingen, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Edgar Y. Walker
Jacob Reimer
4Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
5Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jacob Reimer
Philipp Berens
5Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
6Institute for Ophthalmic Research, University of Tübingen, Germany
7Department of Computer Science, University of Tübingen, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Philipp Berens
Haim Sompolinsky
2Edmond and Lily Safra Center for Brain Sciences, Hebrew University of Jerusalem, Israel
3Center for Brain Science, Harvard University, Cambridge, MA, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Haim Sompolinsky
Andreas S. Tolias
4Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
5Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
8Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Andreas S. Tolias
  • For correspondence: frouman@imbb.forth.gr astolias@bcm.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

Despite variations in appearance we robustly recognize objects. Neuronal populations responding to objects presented under varying conditions form object manifolds and hierarchically organized visual areas untangle pixel intensities into linearly decodable object representations. However, the associated changes in the geometry of object manifolds along the cortex remain unknown. Using home cage training we showed that mice are capable of invariant object recognition. We simultaneously recorded the responses of thousands of neurons to measure the information about object identity across the visual cortex and found that lateral areas LM, LI and AL carry more linearly decodable object information compared to other visual areas. We applied the theory of linear separability of manifolds, and found that the increase in classification capacity is associated with a decrease in the dimension and radius of the object manifold, identifying the key features in the geometry of the population neural code that enable invariant object coding.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Added acknowledgments

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted September 22, 2021.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Object manifold geometry across the mouse cortical visual hierarchy
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Object manifold geometry across the mouse cortical visual hierarchy
Emmanouil Froudarakis, Uri Cohen, Maria Diamantaki, Edgar Y. Walker, Jacob Reimer, Philipp Berens, Haim Sompolinsky, Andreas S. Tolias
bioRxiv 2020.08.20.258798; doi: https://doi.org/10.1101/2020.08.20.258798
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Object manifold geometry across the mouse cortical visual hierarchy
Emmanouil Froudarakis, Uri Cohen, Maria Diamantaki, Edgar Y. Walker, Jacob Reimer, Philipp Berens, Haim Sompolinsky, Andreas S. Tolias
bioRxiv 2020.08.20.258798; doi: https://doi.org/10.1101/2020.08.20.258798

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Neuroscience
Subject Areas
All Articles
  • Animal Behavior and Cognition (4223)
  • Biochemistry (9101)
  • Bioengineering (6748)
  • Bioinformatics (23929)
  • Biophysics (12080)
  • Cancer Biology (9488)
  • Cell Biology (13725)
  • Clinical Trials (138)
  • Developmental Biology (7614)
  • Ecology (11653)
  • Epidemiology (2066)
  • Evolutionary Biology (15471)
  • Genetics (10613)
  • Genomics (14289)
  • Immunology (9454)
  • Microbiology (22773)
  • Molecular Biology (9065)
  • Neuroscience (48824)
  • Paleontology (354)
  • Pathology (1479)
  • Pharmacology and Toxicology (2560)
  • Physiology (3820)
  • Plant Biology (8307)
  • Scientific Communication and Education (1467)
  • Synthetic Biology (2287)
  • Systems Biology (6168)
  • Zoology (1297)