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Estimating encounter location distributions from animal tracking data

View ORCID ProfileMichael J. Noonan, View ORCID ProfileRicardo Martinez-Garcia, View ORCID ProfileGrace H. Davis, View ORCID ProfileMargaret C. Crofoot, View ORCID ProfileRoland Kays, View ORCID ProfileBen T. Hirsch, Damien Caillaud, Eric Payne, View ORCID ProfileAndrew Sih, David L. Sinn, View ORCID ProfileOrr Spiegel, View ORCID ProfileWilliam F. Fagan, View ORCID ProfileChristen H. Fleming, View ORCID ProfileJustin M. Calabrese
doi: https://doi.org/10.1101/2020.08.24.261628
Michael J. Noonan
1The Irving K. Barber School of Arts and Sciences, The University of British Columbia, Okanagan campus, 1177 Research Road, Kelowna, BC Canada V1V 1V7
2Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd., Front Royal, VA 22630, USA
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  • For correspondence: michael.noonan@ubc.ca
Ricardo Martinez-Garcia
3ICTP South American Institute for Fundamental Research & Instituto de Fisica Teorica - UNESP, Rua Dr. Bento Teobaldo Ferraz 271, Bloco 2 - Barra Funda 01140-070 Sao Paulo, SP Brazil
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Grace H. Davis
4Department of Anthropology, University of California, Davis, CA, U.S.A.
5Smithsonian Tropical Research Institute, Panama City, Panama
6Department for the Ecology of Animal Societies, Max Planck Institute of Animal Behavior, Konstanz, Germany
7Department of Biology, University of Konstanz, Konstanz, Germany
8Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany
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Margaret C. Crofoot
4Department of Anthropology, University of California, Davis, CA, U.S.A.
5Smithsonian Tropical Research Institute, Panama City, Panama
6Department for the Ecology of Animal Societies, Max Planck Institute of Animal Behavior, Konstanz, Germany
7Department of Biology, University of Konstanz, Konstanz, Germany
8Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany
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Roland Kays
9North Carolina Museum of Natural Sciences and North Carolina State University, Raleigh, NC, USA
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Ben T. Hirsch
10College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
5Smithsonian Tropical Research Institute, Panama City, Panama
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Damien Caillaud
4Department of Anthropology, University of California, Davis, CA, U.S.A.
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Eric Payne
11Department of Environmental Science and Policy, University of California Davis. One Shields Ave, Davis, CA 95616
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Andrew Sih
11Department of Environmental Science and Policy, University of California Davis. One Shields Ave, Davis, CA 95616
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David L. Sinn
11Department of Environmental Science and Policy, University of California Davis. One Shields Ave, Davis, CA 95616
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Orr Spiegel
12School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
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William F. Fagan
13Department of Biology, University of Maryland, College Park, MD 20742, USA
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Christen H. Fleming
2Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd., Front Royal, VA 22630, USA
13Department of Biology, University of Maryland, College Park, MD 20742, USA
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Justin M. Calabrese
14Center for Advanced Systems Understanding (CASUS), Görlitz, Germany
15Helmholtz Centre for Environmental Research – UFZ, Department of Ecological Modelling, Permoserstr. 15, 04318 Leipzig, Germany
13Department of Biology, University of Maryland, College Park, MD 20742, USA
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Abstract

  1. Ecologists have long been interested in linking individual behavior with higher-level processes. For motile species, this ‘upscaling’ is governed by how well any given movement strategy maximizes encounters with positive factors, and minimizes encounters with negative factors. Despite the importance of encounter events for a broad range of ecological processes, encounter theory has not kept pace with developments in animal tracking or movement modeling. Furthermore, existing work has focused primarily on the relationship between animal movement and encounter rates while no theoretical framework exists for directly relating individual movement with the spatial locations of encounter events in the environment.

  2. Here, we bridge this gap by introducing a new theoretical concept describing the long-term encounter location probabilities for movement within home ranges, termed the conditional distribution of encounters (CDE). We then derive this distribution, as well as confidence intervals, implement its statistical estimator into open source software, and demonstrate the broad ecological relevance of this novel concept.

  3. We first use simulated data to show how our estimator provides asymptotically consistent estimates. We then demonstrate the general utility of this method for three simulation-based scenarios that occur routinely in biological systems: i) a population of individuals with home ranges that overlap with neighbors; ii) a pair of individuals with a hard territorial border between their home ranges; and iii) a predator with a large home range that encompassed the home ranges of multiple prey individuals. Using GPS data from white-faced capuchins (Cebus capucinus) tracked on Barro Colorado Island, Panama, and sleepy lizards (Tiliqua rugosa) tracked in Bundey, South Australia, we then show how the CDE can be used to estimate the locations of territorial borders, identify key resources, quantify the location-specific potential for competition, and/or identify any changes in behaviour that directly result from location-specific encounter probability.

  4. This novel target distribution enables researchers to better understand the dynamics of populations of interacting individuals. Notably, the general estimation framework developed in this work builds straightforwardly off of home range estimation and requires no specialised data collection protocols. This method is now openly available via the ctmm R package.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 25, 2020.
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Estimating encounter location distributions from animal tracking data
Michael J. Noonan, Ricardo Martinez-Garcia, Grace H. Davis, Margaret C. Crofoot, Roland Kays, Ben T. Hirsch, Damien Caillaud, Eric Payne, Andrew Sih, David L. Sinn, Orr Spiegel, William F. Fagan, Christen H. Fleming, Justin M. Calabrese
bioRxiv 2020.08.24.261628; doi: https://doi.org/10.1101/2020.08.24.261628
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Estimating encounter location distributions from animal tracking data
Michael J. Noonan, Ricardo Martinez-Garcia, Grace H. Davis, Margaret C. Crofoot, Roland Kays, Ben T. Hirsch, Damien Caillaud, Eric Payne, Andrew Sih, David L. Sinn, Orr Spiegel, William F. Fagan, Christen H. Fleming, Justin M. Calabrese
bioRxiv 2020.08.24.261628; doi: https://doi.org/10.1101/2020.08.24.261628

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