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Transcriptional subtype-specific microenvironmental crosstalk and tumor cell plasticity in metastatic pancreatic cancer
Srivatsan Raghavan, Peter S. Winter, Andrew W. Navia, Hannah L. Williams, Alan DenAdel, Radha L. Kalekar, Jennyfer Galvez-Reyes, Kristen E. Lowder, Nolawit Mulugeta, Manisha S. Raghavan, Ashir A. Borah, Sara A. Väyrynen, Andressa Dias Costa, Raymond W.S. Ng, Junning Wang, Emma Reilly, Dorisanne Y. Ragon, Lauren K. Brais, Alex M. Jaeger, Liam F. Spurr, Yvonne Y. Li, Andrew D. Cherniack, Isaac Wakiro, Asaf Rotem, Bruce E. Johnson, James M. McFarland, Ewa T. Sicinska, Tyler E. Jacks, Thomas E. Clancy, Kimberly Perez, Douglas A. Rubinson, Kimmie Ng, James M. Cleary, Lorin Crawford, Scott R. Manalis, Jonathan A. Nowak, Brian M. Wolpin, William C. Hahn, Andrew J. Aguirre, Alex K. Shalek
doi: https://doi.org/10.1101/2020.08.25.256214
Srivatsan Raghavan
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
Peter S. Winter
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
5Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA
6Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA
Andrew W. Navia
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
5Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA
6Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA
7Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA
Hannah L. Williams
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
Alan DenAdel
8Center for Computational Molecular Biology, Brown University, Providence, RI
9Division of Applied Mathematics, Brown University, Providence, RI
Radha L. Kalekar
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
Jennyfer Galvez-Reyes
2Broad Institute of MIT and Harvard, Cambridge, MA
5Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA
6Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA
Kristen E. Lowder
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
Nolawit Mulugeta
2Broad Institute of MIT and Harvard, Cambridge, MA
5Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA
6Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA
Manisha S. Raghavan
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
Ashir A. Borah
2Broad Institute of MIT and Harvard, Cambridge, MA
Sara A. Väyrynen
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
Andressa Dias Costa
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
Raymond W.S. Ng
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
Junning Wang
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
Emma Reilly
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
Dorisanne Y. Ragon
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
Lauren K. Brais
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
Alex M. Jaeger
6Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA
Liam F. Spurr
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
Yvonne Y. Li
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
Andrew D. Cherniack
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
Isaac Wakiro
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
Asaf Rotem
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
10Center for Cancer Genomics, Dana-Farber Cancer Institute, Boston, MA
Bruce E. Johnson
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
10Center for Cancer Genomics, Dana-Farber Cancer Institute, Boston, MA
James M. McFarland
2Broad Institute of MIT and Harvard, Cambridge, MA
Ewa T. Sicinska
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
Tyler E. Jacks
6Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA
Thomas E. Clancy
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
11Department of Surgery, Brigham and Women’s Hospital, Boston, MA
Kimberly Perez
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
Douglas A. Rubinson
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
Kimmie Ng
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
James M. Cleary
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
Lorin Crawford
8Center for Computational Molecular Biology, Brown University, Providence, RI
12Department of Biostatistics, Brown University, Providence, RI
Scott R. Manalis
6Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA
13Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA
Jonathan A. Nowak
3Harvard Medical School, Boston, MA
14Department of Oncologic Pathology, Dana-Farber Cancer Institute, Boston, MA
15Department of Pathology, Brigham and Women’s Hospital, Boston, MA
Brian M. Wolpin
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
William C. Hahn
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
Andrew J. Aguirre
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA
2Broad Institute of MIT and Harvard, Cambridge, MA
3Harvard Medical School, Boston, MA
4Department of Medicine, Brigham and Women’s Hospital, Boston, MA
Alex K. Shalek
2Broad Institute of MIT and Harvard, Cambridge, MA
3Harvard Medical School, Boston, MA
5Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, MA
7Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA
16Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA
Article usage
Posted August 25, 2020.
Transcriptional subtype-specific microenvironmental crosstalk and tumor cell plasticity in metastatic pancreatic cancer
Srivatsan Raghavan, Peter S. Winter, Andrew W. Navia, Hannah L. Williams, Alan DenAdel, Radha L. Kalekar, Jennyfer Galvez-Reyes, Kristen E. Lowder, Nolawit Mulugeta, Manisha S. Raghavan, Ashir A. Borah, Sara A. Väyrynen, Andressa Dias Costa, Raymond W.S. Ng, Junning Wang, Emma Reilly, Dorisanne Y. Ragon, Lauren K. Brais, Alex M. Jaeger, Liam F. Spurr, Yvonne Y. Li, Andrew D. Cherniack, Isaac Wakiro, Asaf Rotem, Bruce E. Johnson, James M. McFarland, Ewa T. Sicinska, Tyler E. Jacks, Thomas E. Clancy, Kimberly Perez, Douglas A. Rubinson, Kimmie Ng, James M. Cleary, Lorin Crawford, Scott R. Manalis, Jonathan A. Nowak, Brian M. Wolpin, William C. Hahn, Andrew J. Aguirre, Alex K. Shalek
bioRxiv 2020.08.25.256214; doi: https://doi.org/10.1101/2020.08.25.256214
Transcriptional subtype-specific microenvironmental crosstalk and tumor cell plasticity in metastatic pancreatic cancer
Srivatsan Raghavan, Peter S. Winter, Andrew W. Navia, Hannah L. Williams, Alan DenAdel, Radha L. Kalekar, Jennyfer Galvez-Reyes, Kristen E. Lowder, Nolawit Mulugeta, Manisha S. Raghavan, Ashir A. Borah, Sara A. Väyrynen, Andressa Dias Costa, Raymond W.S. Ng, Junning Wang, Emma Reilly, Dorisanne Y. Ragon, Lauren K. Brais, Alex M. Jaeger, Liam F. Spurr, Yvonne Y. Li, Andrew D. Cherniack, Isaac Wakiro, Asaf Rotem, Bruce E. Johnson, James M. McFarland, Ewa T. Sicinska, Tyler E. Jacks, Thomas E. Clancy, Kimberly Perez, Douglas A. Rubinson, Kimmie Ng, James M. Cleary, Lorin Crawford, Scott R. Manalis, Jonathan A. Nowak, Brian M. Wolpin, William C. Hahn, Andrew J. Aguirre, Alex K. Shalek
bioRxiv 2020.08.25.256214; doi: https://doi.org/10.1101/2020.08.25.256214
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