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Potential For Applying Continuous Directed Evolution To Plant Enzymes

View ORCID ProfileJorge D. García-García, View ORCID ProfileJaya Joshi, Jenelle A. Patterson, Lidimarie Trujillo-Rodriguez, Christopher R. Reisch, Alex A. Javanpour, View ORCID ProfileChang C. Liu, View ORCID ProfileAndrew D. Hanson
doi: https://doi.org/10.1101/2020.08.26.265678
Jorge D. García-García
1Horticultural Sciences Department, University of Florida, Gainesville, FL, USA
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  • For correspondence: jgarciagarcia@ufl.edu jjoshi@ufl.edu patterson.j@ufl.edu
Jaya Joshi
1Horticultural Sciences Department, University of Florida, Gainesville, FL, USA
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  • For correspondence: jgarciagarcia@ufl.edu jjoshi@ufl.edu patterson.j@ufl.edu
Jenelle A. Patterson
1Horticultural Sciences Department, University of Florida, Gainesville, FL, USA
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  • For correspondence: jgarciagarcia@ufl.edu jjoshi@ufl.edu patterson.j@ufl.edu
Lidimarie Trujillo-Rodriguez
2Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA
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Christopher R. Reisch
2Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA
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Alex A. Javanpour
3Department of Biomedical Engineering, University of California, Irvine, Irvine, CA, USA
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Chang C. Liu
3Department of Biomedical Engineering, University of California, Irvine, Irvine, CA, USA
4Department of Chemistry, University of California, Irvine, Irvine, CA, USA
5Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, USA
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Andrew D. Hanson
1Horticultural Sciences Department, University of Florida, Gainesville, FL, USA
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SUMMARY

Plant evolution has produced enzymes that may not be optimal for maximizing yield and quality in today’s agricultural environments and plant biotechnology applications. By improving enzyme performance, it should be possible to alleviate constraints on yield and quality currently imposed by kinetic properties or enzyme instability. Enzymes can be optimized faster than naturally possible by applying directed evolution, which entails mutating a target gene in vitro and screening or selecting the mutated gene products for the desired characteristics. Continuous directed evolution is a more efficient and scalable version that accomplishes the mutagenesis and selection steps simultaneously in vivo via error-prone replication of the target gene and coupling of the host cell’s growth rate to the target gene’s function. However, published continuous systems require custom plasmid assembly, and convenient multipurpose platforms are not available. We discuss two systems suitable for continuous directed evolution of enzymes, OrthoRep in Saccharomyces cerevisiae and EvolvR in Escherichia coli, and our pilot efforts to adapt each system for high-throughput plant enzyme engineering. To test our modified systems, we used the thiamin synthesis enzyme THI4, previously identified as a prime candidate for improvement. Our adapted OrthoRep system shows promise for efficient plant enzyme engineering.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 27, 2020.
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Potential For Applying Continuous Directed Evolution To Plant Enzymes
Jorge D. García-García, Jaya Joshi, Jenelle A. Patterson, Lidimarie Trujillo-Rodriguez, Christopher R. Reisch, Alex A. Javanpour, Chang C. Liu, Andrew D. Hanson
bioRxiv 2020.08.26.265678; doi: https://doi.org/10.1101/2020.08.26.265678
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Potential For Applying Continuous Directed Evolution To Plant Enzymes
Jorge D. García-García, Jaya Joshi, Jenelle A. Patterson, Lidimarie Trujillo-Rodriguez, Christopher R. Reisch, Alex A. Javanpour, Chang C. Liu, Andrew D. Hanson
bioRxiv 2020.08.26.265678; doi: https://doi.org/10.1101/2020.08.26.265678

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