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Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram
View ORCID ProfileTommaso Biancalani, View ORCID ProfileGabriele Scalia, View ORCID ProfileLorenzo Buffoni, View ORCID ProfileRaghav Avasthi, View ORCID ProfileZiqing Lu, View ORCID ProfileAman Sanger, View ORCID ProfileNeriman Tokcan, View ORCID ProfileCharles R. Vanderburg, View ORCID ProfileAsa Segerstolpe, View ORCID ProfileMeng Zhang, View ORCID ProfileInbal Avraham-Davidi, View ORCID ProfileSanja Vickovic, View ORCID ProfileMor Nitzan, Sai Ma, View ORCID ProfileJason Buenrostro, View ORCID ProfileNik Bear Brown, View ORCID ProfileDuccio Fanelli, View ORCID ProfileXiaowei Zhuang, View ORCID ProfileEvan Z. Macosko, View ORCID ProfileAviv Regev
doi: https://doi.org/10.1101/2020.08.29.272831
Tommaso Biancalani
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Gabriele Scalia
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Lorenzo Buffoni
2Department of Physics and Astrophysics, University of Florence, Florence, Italy
Raghav Avasthi
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
3Northeastern University, Boston, MA 02115
Ziqing Lu
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
3Northeastern University, Boston, MA 02115
Aman Sanger
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Neriman Tokcan
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Charles R. Vanderburg
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Asa Segerstolpe
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Meng Zhang
4Department of Chemistry and Chemical Biology, Department of Physics, Harvard University
6Howard Hughes Medical Institute
Inbal Avraham-Davidi
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Sanja Vickovic
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Mor Nitzan
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
5School of Engineering and Applied Sciences, Harvard University
Sai Ma
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
7Department of Biology, MIT, Cambridge, MA 02140
8Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA
Jason Buenrostro
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
8Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, 02138 USA
Nik Bear Brown
3Northeastern University, Boston, MA 02115
Duccio Fanelli
2Department of Physics and Astrophysics, University of Florence, Florence, Italy
Xiaowei Zhuang
4Department of Chemistry and Chemical Biology, Department of Physics, Harvard University
6Howard Hughes Medical Institute
Evan Z. Macosko
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
Aviv Regev
1Broad Institute of MIT and Harvard, Cambridge, MA 02142
6Howard Hughes Medical Institute
7Department of Biology, MIT, Cambridge, MA 02140
9Genentech, 1 DNA Way, South San Francisco, CA, 94080
Posted September 15, 2020.
Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram
Tommaso Biancalani, Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger, Neriman Tokcan, Charles R. Vanderburg, Asa Segerstolpe, Meng Zhang, Inbal Avraham-Davidi, Sanja Vickovic, Mor Nitzan, Sai Ma, Jason Buenrostro, Nik Bear Brown, Duccio Fanelli, Xiaowei Zhuang, Evan Z. Macosko, Aviv Regev
bioRxiv 2020.08.29.272831; doi: https://doi.org/10.1101/2020.08.29.272831
Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram
Tommaso Biancalani, Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger, Neriman Tokcan, Charles R. Vanderburg, Asa Segerstolpe, Meng Zhang, Inbal Avraham-Davidi, Sanja Vickovic, Mor Nitzan, Sai Ma, Jason Buenrostro, Nik Bear Brown, Duccio Fanelli, Xiaowei Zhuang, Evan Z. Macosko, Aviv Regev
bioRxiv 2020.08.29.272831; doi: https://doi.org/10.1101/2020.08.29.272831
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