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Multi-regional module-based signal transmission in mouse visual cortex

View ORCID ProfileXiaoxuan Jia, View ORCID ProfileJoshua H. Siegle, Séverine Durand, View ORCID ProfileGreggory Heller, View ORCID ProfileTamina Ramirez, View ORCID ProfileChristof Koch, View ORCID ProfileShawn R. Olsen
doi: https://doi.org/10.1101/2020.08.30.272948
Xiaoxuan Jia
1Allen Institute, Seattle, WA 98109, USA
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  • For correspondence: jxiaoxuan@gmail.com shawno@alleninstitute.org
Joshua H. Siegle
1Allen Institute, Seattle, WA 98109, USA
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Séverine Durand
1Allen Institute, Seattle, WA 98109, USA
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Greggory Heller
1Allen Institute, Seattle, WA 98109, USA
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Tamina Ramirez
1Allen Institute, Seattle, WA 98109, USA
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Christof Koch
1Allen Institute, Seattle, WA 98109, USA
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Shawn R. Olsen
1Allen Institute, Seattle, WA 98109, USA
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  • For correspondence: jxiaoxuan@gmail.com shawno@alleninstitute.org
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Abstract

The visual cortex is organized hierarchically, but the presence of extensive recurrent and parallel pathways make it challenging to decipher how signals flow between neuronal populations. Here, we tracked the flow of spiking activity recorded from six interconnected levels of the mouse visual hierarchy. By analyzing leading and lagging spike-timing relationships among pairs of simultaneously recorded neurons, we created a cellular-scale directed network graph. Using a module-detection algorithm to cluster neurons based on shared connectivity patterns, we uncovered two multi-regional communication modules distributed across the hierarchy. The direction of signal flow between and within these modules, differences in layer and area distributions, and distinct temporal dynamics suggest that one module is positioned to transmit feedforward sensory signals, whereas the other integrates inputs for recurrent processing. These results suggest that multi-regional functional modules may be a fundamental feature of organization beyond cortical areas that supports signal propagation across hierarchical recurrent networks.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Supplemental files updated. Figures revised.

  • https://github.com/AllenInstitute/AllenSDK

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted July 20, 2021.
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Multi-regional module-based signal transmission in mouse visual cortex
Xiaoxuan Jia, Joshua H. Siegle, Séverine Durand, Greggory Heller, Tamina Ramirez, Christof Koch, Shawn R. Olsen
bioRxiv 2020.08.30.272948; doi: https://doi.org/10.1101/2020.08.30.272948
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Multi-regional module-based signal transmission in mouse visual cortex
Xiaoxuan Jia, Joshua H. Siegle, Séverine Durand, Greggory Heller, Tamina Ramirez, Christof Koch, Shawn R. Olsen
bioRxiv 2020.08.30.272948; doi: https://doi.org/10.1101/2020.08.30.272948

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