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Genomic signatures of the unjamming transition in compressed human bronchial epithelial cells

Margherita De Marzio, Ayşe Kılıç, Enrico Maiorino, Jennifer Mitchel, Maureen McGill, Robert Chase, Jeffrey J. Fredberg, Jin-Ah Park, Kimberly Glass, Scott T. Weiss
doi: https://doi.org/10.1101/2020.09.01.277962
Margherita De Marzio
1Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston MA, USA
2Department of Environmental Health, Harvard TH Chan School of Public Health, Boston MA, USA
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Ayşe Kılıç
1Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston MA, USA
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Enrico Maiorino
1Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston MA, USA
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Jennifer Mitchel
2Department of Environmental Health, Harvard TH Chan School of Public Health, Boston MA, USA
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Maureen McGill
2Department of Environmental Health, Harvard TH Chan School of Public Health, Boston MA, USA
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Robert Chase
1Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston MA, USA
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Jeffrey J. Fredberg
2Department of Environmental Health, Harvard TH Chan School of Public Health, Boston MA, USA
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Jin-Ah Park
2Department of Environmental Health, Harvard TH Chan School of Public Health, Boston MA, USA
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Kimberly Glass
1Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston MA, USA
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  • For correspondence: kimberly.glass@channing.harvard.edu scott.weiss@channing.harvard.edu
Scott T. Weiss
1Channing Division of Network Medicine, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston MA, USA
2Department of Environmental Health, Harvard TH Chan School of Public Health, Boston MA, USA
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  • For correspondence: kimberly.glass@channing.harvard.edu scott.weiss@channing.harvard.edu
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Abstract

Epithelial tissue has the capacity to switch from a collective phase that is quiescent, solidlike and non-migratory to one that is dynamic, fluid-like and migratory. In certain physiological and pathophysiological contexts this phenotypic switch has been attributed not to the well-known epithelial-to-mesenchymal transition, EMT, but rather to the recently discovered unjamming transition, UJT. UJT has been characterized thus far mainly at functional and morphological levels whereas underlying genome-wide molecular events remain largely unexplored. Using primary human bronchial epithelial cells and one well-defined trigger of UJT –mechanical compression– here we combine temporal RNA-Seq data and Protein-Protein Interaction networks to provide the first genome-wide analysis of UJT. Our results show that compression induces a multiphasic transcriptional response characterized by an early activation of genes regulating the membrane and actomyosin structure, and a delayed activation of genes regulating the extracellular matrix and cellmatrix interactions. This biphasic response is mediated by a cascade of signaling processes that promotes actin polymerization through the recruitment of integrin-ECM adhesive complexes and promotes increased cellular motility through activation of AP-1 transcription factors via ERK and JNK pathways. These findings, taken together, show that the UJT program is not the result of any single signaling pathway but rather comprises a coordinated interplay of downstream pathways including development, fate selection, energy metabolism, cytoskeletal reorganization, and adhesive interaction with extracellular matrix.

Competing Interest Statement

The authors have declared no competing interest.

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  • ↵* co-first authors

  • ↵✢ co-last authors

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Posted September 02, 2020.
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Genomic signatures of the unjamming transition in compressed human bronchial epithelial cells
Margherita De Marzio, Ayşe Kılıç, Enrico Maiorino, Jennifer Mitchel, Maureen McGill, Robert Chase, Jeffrey J. Fredberg, Jin-Ah Park, Kimberly Glass, Scott T. Weiss
bioRxiv 2020.09.01.277962; doi: https://doi.org/10.1101/2020.09.01.277962
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Genomic signatures of the unjamming transition in compressed human bronchial epithelial cells
Margherita De Marzio, Ayşe Kılıç, Enrico Maiorino, Jennifer Mitchel, Maureen McGill, Robert Chase, Jeffrey J. Fredberg, Jin-Ah Park, Kimberly Glass, Scott T. Weiss
bioRxiv 2020.09.01.277962; doi: https://doi.org/10.1101/2020.09.01.277962

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