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MicroED structure of lipid-embedded mammalian mitochondrial voltage dependent anion channel

Michael W. Martynowycz, Farha Khan, Johan Hattne, Jeff Abramson, Tamir Gonen
doi: https://doi.org/10.1101/2020.09.17.302109
Michael W. Martynowycz
1Department of Biological Chemistry, University of California Los Angeles, 615 Charles E Young Drive South, Los Angeles, CA 90095
2Department of Physiology, University of California Los Angeles, 615 Charles E Young Drive South, Los Angeles, CA 90095
3Howard Hughes Medical Institute, University of California Los Angeles, Los Angeles, CA90095
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Farha Khan
2Department of Physiology, University of California Los Angeles, 615 Charles E Young Drive South, Los Angeles, CA 90095
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Johan Hattne
1Department of Biological Chemistry, University of California Los Angeles, 615 Charles E Young Drive South, Los Angeles, CA 90095
2Department of Physiology, University of California Los Angeles, 615 Charles E Young Drive South, Los Angeles, CA 90095
3Howard Hughes Medical Institute, University of California Los Angeles, Los Angeles, CA90095
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Jeff Abramson
2Department of Physiology, University of California Los Angeles, 615 Charles E Young Drive South, Los Angeles, CA 90095
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Tamir Gonen
1Department of Biological Chemistry, University of California Los Angeles, 615 Charles E Young Drive South, Los Angeles, CA 90095
2Department of Physiology, University of California Los Angeles, 615 Charles E Young Drive South, Los Angeles, CA 90095
3Howard Hughes Medical Institute, University of California Los Angeles, Los Angeles, CA90095
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  • For correspondence: tgonen@g.ucla.edu
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Abstract

A near-atomic resolution structure of the mouse voltage dependent anion channel (mVDAC) is determined by combining cryogenic focused ion-beam (FIB) milling and microcrystal electron diffraction (MicroED). The crystals were grown in a viscous modified bicelle suspension which limited their size and made them unsuitable for conventional X-ray crystallography. Individual thin, plate-like crystals were identified using scanning electron microscopy (SEM) and focused ion-beam (FIB) imaging at high magnification. Three crystals were milled into thin lamellae. MicroED data were collected from each lamellae and merged to increase completeness. Unmodelled densities were observed between protein monomers, suggesting the presence of lipids that likely mediate crystal contacts. This work demonstrates the utility of milling membrane protein microcrystals grown in viscous media using a focused ion-beam for subsequent structure determination by MicroED for samples that are not otherwise tractable by other crystallographic methods. To our knowledge, the structure presented here is the first of a membrane protein crystallized in a lipid matrix and solved by MicroED.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted September 20, 2020.
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MicroED structure of lipid-embedded mammalian mitochondrial voltage dependent anion channel
Michael W. Martynowycz, Farha Khan, Johan Hattne, Jeff Abramson, Tamir Gonen
bioRxiv 2020.09.17.302109; doi: https://doi.org/10.1101/2020.09.17.302109
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MicroED structure of lipid-embedded mammalian mitochondrial voltage dependent anion channel
Michael W. Martynowycz, Farha Khan, Johan Hattne, Jeff Abramson, Tamir Gonen
bioRxiv 2020.09.17.302109; doi: https://doi.org/10.1101/2020.09.17.302109

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