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Measuring competitive exclusion in non-small cell lung cancer

Nathan Farrokhian, View ORCID ProfileJeff Maltas, Mina Dinh, View ORCID ProfileArda Durmaz, Patrick Ellsworth, Masahiro Hitomi, Erin McClure, Andriy Marusyk, Artem Kaznatcheev, View ORCID ProfileJacob G Scott
doi: https://doi.org/10.1101/2020.09.18.303966
Nathan Farrokhian
1Case Western Reserve School of Medicine, Cleveland, OH, USA
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Jeff Maltas
2Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA
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Mina Dinh
2Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA
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Arda Durmaz
1Case Western Reserve School of Medicine, Cleveland, OH, USA
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Patrick Ellsworth
1Case Western Reserve School of Medicine, Cleveland, OH, USA
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Masahiro Hitomi
2Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA
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Erin McClure
2Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA
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Andriy Marusyk
3Department of Cancer Physiology, Moffitt Cancer Center, Tampa, FL, USA
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Artem Kaznatcheev
4Department of Biology, University of Pennsylvania, Philadelphia, PA, USA
5Department of Computer Science, University of Oxford, Oxford, UK
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  • For correspondence: scottj10@ccf.org kaznatcheev.artem@gmail.com
Jacob G Scott
1Case Western Reserve School of Medicine, Cleveland, OH, USA
2Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, OH, USA
6Department of Radiation Oncology, Cleveland Clinic, Cleveland, OH, USA
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  • For correspondence: scottj10@ccf.org kaznatcheev.artem@gmail.com
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ABSTRACT

Therapeutic strategies for tumor control have traditionally assumed that maximizing reduction in tumor volume correlates with clinical efficacy. Unfortunately, this rapid decrease in tumor burden is almost invariably followed by the emergence of therapeutic resistance. Evolutionary based treatment strategies attempt to delay resistance via judicious treatments that maintain a significant treatable subpopulation. While these strategies have shown promise in recent clinical trials, they often rely on biological conjecture and intuition to derive parameters. In this study we experimentally measure the frequency-dependent interactions between a gefitinib resistant non-small cell lung cancer (NSCLC) population and its sensitive ancestor via the evolutionary game assay. We show that cost of resistance is insufficient to accurately predict competitive exclusion and that frequency-dependent growth rate measurements are required. In addition, we show that frequency-dependent growth rate changes may ultimately result in a safe harbor for resistant populations to safely accumulate, even those with significant cost of resistance. Using frequency-dependent growth rate data we then show that gefitinib treatment results in competitive exclusion of the ancestor, while absence of treatment results in a likely, but not guaranteed exclusion of the resistant strain. Finally, using our empirically derived growth rates to constrain simulations, we demonstrate that incorporating ecological growth effects can dramatically change the predicted time to sensitive strain extinction. In addition, we show that higher drug concentrations may not lead to the optimal reduction in tumor burden. Taken together, these results highlight the potential importance of frequency-dependent growth rate data for understanding competing populations, both in the laboratory and the clinic.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Revised manuscript for focus and clarity of message.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted September 29, 2021.
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Measuring competitive exclusion in non-small cell lung cancer
Nathan Farrokhian, Jeff Maltas, Mina Dinh, Arda Durmaz, Patrick Ellsworth, Masahiro Hitomi, Erin McClure, Andriy Marusyk, Artem Kaznatcheev, Jacob G Scott
bioRxiv 2020.09.18.303966; doi: https://doi.org/10.1101/2020.09.18.303966
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Measuring competitive exclusion in non-small cell lung cancer
Nathan Farrokhian, Jeff Maltas, Mina Dinh, Arda Durmaz, Patrick Ellsworth, Masahiro Hitomi, Erin McClure, Andriy Marusyk, Artem Kaznatcheev, Jacob G Scott
bioRxiv 2020.09.18.303966; doi: https://doi.org/10.1101/2020.09.18.303966

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