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Copy-scAT: An R package for detection of large-scale and focal copy number alterations in single-cell chromatin accessibility datasets

Ana Nikolic, Divya Singhal, Katrina Ellestad, Michael Johnston, Aaron Gillmor, Sorana Morrissy, Jennifer A Chan, Paola Neri, Nizar Bahlis, View ORCID ProfileMarco Gallo
doi: https://doi.org/10.1101/2020.09.21.305516
Ana Nikolic
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Divya Singhal
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Katrina Ellestad
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Michael Johnston
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Aaron Gillmor
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Sorana Morrissy
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Jennifer A Chan
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
4Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Paola Neri
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
4Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Nizar Bahlis
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
4Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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Marco Gallo
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
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  • ORCID record for Marco Gallo
  • For correspondence: marco.gallo@ucalgary.ca
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Posted September 22, 2020.
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Copy-scAT: An R package for detection of large-scale and focal copy number alterations in single-cell chromatin accessibility datasets
Ana Nikolic, Divya Singhal, Katrina Ellestad, Michael Johnston, Aaron Gillmor, Sorana Morrissy, Jennifer A Chan, Paola Neri, Nizar Bahlis, Marco Gallo
bioRxiv 2020.09.21.305516; doi: https://doi.org/10.1101/2020.09.21.305516
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Copy-scAT: An R package for detection of large-scale and focal copy number alterations in single-cell chromatin accessibility datasets
Ana Nikolic, Divya Singhal, Katrina Ellestad, Michael Johnston, Aaron Gillmor, Sorana Morrissy, Jennifer A Chan, Paola Neri, Nizar Bahlis, Marco Gallo
bioRxiv 2020.09.21.305516; doi: https://doi.org/10.1101/2020.09.21.305516

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