New Results
Copy-scAT: An R package for detection of large-scale and focal copy number alterations in single-cell chromatin accessibility datasets
Ana Nikolic, Divya Singhal, Katrina Ellestad, Michael Johnston, Aaron Gillmor, Sorana Morrissy, Jennifer A Chan, Paola Neri, Nizar Bahlis, View ORCID ProfileMarco Gallo
doi: https://doi.org/10.1101/2020.09.21.305516
Ana Nikolic
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Divya Singhal
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Katrina Ellestad
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Michael Johnston
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Aaron Gillmor
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Sorana Morrissy
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Jennifer A Chan
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
4Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Paola Neri
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
4Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Nizar Bahlis
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
4Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
Marco Gallo
1Department of Biochemistry and Molecular Biology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
2Arnie Charbonneau Cancer Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
3Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada

Article usage
Posted September 22, 2020.
Copy-scAT: An R package for detection of large-scale and focal copy number alterations in single-cell chromatin accessibility datasets
Ana Nikolic, Divya Singhal, Katrina Ellestad, Michael Johnston, Aaron Gillmor, Sorana Morrissy, Jennifer A Chan, Paola Neri, Nizar Bahlis, Marco Gallo
bioRxiv 2020.09.21.305516; doi: https://doi.org/10.1101/2020.09.21.305516
Copy-scAT: An R package for detection of large-scale and focal copy number alterations in single-cell chromatin accessibility datasets
Ana Nikolic, Divya Singhal, Katrina Ellestad, Michael Johnston, Aaron Gillmor, Sorana Morrissy, Jennifer A Chan, Paola Neri, Nizar Bahlis, Marco Gallo
bioRxiv 2020.09.21.305516; doi: https://doi.org/10.1101/2020.09.21.305516
Subject Area
Subject Areas
- Biochemistry (8783)
- Bioengineering (6490)
- Bioinformatics (23375)
- Biophysics (11761)
- Cancer Biology (9163)
- Cell Biology (13266)
- Clinical Trials (138)
- Developmental Biology (7419)
- Ecology (11378)
- Epidemiology (2066)
- Evolutionary Biology (15100)
- Genetics (10406)
- Genomics (14017)
- Immunology (9133)
- Microbiology (22084)
- Molecular Biology (8792)
- Neuroscience (47417)
- Paleontology (350)
- Pathology (1421)
- Pharmacology and Toxicology (2483)
- Physiology (3709)
- Plant Biology (8056)
- Synthetic Biology (2213)
- Systems Biology (6019)
- Zoology (1251)