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The COVID-19 PHARMACOME: A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization
View ORCID ProfileBruce Schultz, View ORCID ProfileAndrea Zaliani, View ORCID ProfileChristian Ebeling, Jeanette Reinshagen, Denisa Bojkova, Vanessa Lage-Rupprecht, View ORCID ProfileReagon Karki, View ORCID ProfileSören Lukassen, View ORCID ProfileYojana Gadiya, View ORCID ProfileNeal G. Ravindra, View ORCID ProfileSayoni Das, View ORCID ProfileShounak Baksi, View ORCID ProfileDaniel Domingo-Fernández, Manuel Lentzen, Mark Strivens, Tamara Raschka, View ORCID ProfileJindrich Cinatl, View ORCID ProfileLauren Nicole DeLong, Phil Gribbon, View ORCID ProfileGerd Geisslinger, View ORCID ProfileSandra Ciesek, View ORCID ProfileDavid van Dijk, View ORCID ProfileSteve Gardner, View ORCID ProfileAlpha Tom Kodamullil, View ORCID ProfileHolger Fröhlich, View ORCID ProfileManuel Peitsch, View ORCID ProfileMarc Jacobs, View ORCID ProfileJulia Hoeng, View ORCID ProfileRoland Eils, Carsten Claussen, View ORCID ProfileMartin Hofmann-Apitius
doi: https://doi.org/10.1101/2020.09.23.308239
Bruce Schultz
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Andrea Zaliani
2Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, ScreeningPort, 22525 Hamburg, Germany
3Fraunhofer Cluster of Excellence for Immune Mediated Diseases, CIMD, External partner site, 22525 Hamburg, Germany
Christian Ebeling
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Jeanette Reinshagen
2Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, ScreeningPort, 22525 Hamburg, Germany
3Fraunhofer Cluster of Excellence for Immune Mediated Diseases, CIMD, External partner site, 22525 Hamburg, Germany
Denisa Bojkova
11Institute for Medical Virology, University Hospital Frankfurt, 60590 Frankfurt am Main, Germany
Vanessa Lage-Rupprecht
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Reagon Karki
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Sören Lukassen
7Center for Digital Health, Charité Universitätsmedizin Berlin & Berlin Institute of Health (BIH)
Yojana Gadiya
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Neal G. Ravindra
8Center for Biomedical Data Science, Yale School of Medicine, Yale University, 333 Cedar Street, New Haven, CT 06510, USA
Sayoni Das
4PrecisionLife Ltd. Unit 8b Bankside, Hanborough Business Park, Long Hanborough, Oxfordshire, OX29 8LJ, United Kingdom
Shounak Baksi
6Causality BioModels Pvt Ltd., Kinfra Hi-Tech Park, Kerala technology Innovation Zone-KTIZ, Kalamassery, Cochin, 683503-India
Daniel Domingo-Fernández
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Manuel Lentzen
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Mark Strivens
4PrecisionLife Ltd. Unit 8b Bankside, Hanborough Business Park, Long Hanborough, Oxfordshire, OX29 8LJ, United Kingdom
Tamara Raschka
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Jindrich Cinatl
11Institute for Medical Virology, University Hospital Frankfurt, 60590 Frankfurt am Main, Germany
Lauren Nicole DeLong
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Phil Gribbon
2Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, ScreeningPort, 22525 Hamburg, Germany
3Fraunhofer Cluster of Excellence for Immune Mediated Diseases, CIMD, External partner site, 22525 Hamburg, Germany
Gerd Geisslinger
3Fraunhofer Cluster of Excellence for Immune Mediated Diseases, CIMD, External partner site, 22525 Hamburg, Germany
9Pharmazentrum Frankfurt/ZAFES, Institut für Klinische Pharmakologie, Klinikum der Goethe-Universität Frankfurt, 60590 Frankfurt am Main, Germany
10Fraunhofer Institute for Translational Medicine and Pharmacology ITMP,, 60596 Frankfurt am Main, Germany
Sandra Ciesek
10Fraunhofer Institute for Translational Medicine and Pharmacology ITMP,, 60596 Frankfurt am Main, Germany
11Institute for Medical Virology, University Hospital Frankfurt, 60590 Frankfurt am Main, Germany
12DZIF, German Centre for Infection Research, External partner site, 60596 Frankfurt am Main, Germany
David van Dijk
8Center for Biomedical Data Science, Yale School of Medicine, Yale University, 333 Cedar Street, New Haven, CT 06510, USA
Steve Gardner
4PrecisionLife Ltd. Unit 8b Bankside, Hanborough Business Park, Long Hanborough, Oxfordshire, OX29 8LJ, United Kingdom
Alpha Tom Kodamullil
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Holger Fröhlich
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Manuel Peitsch
5Philipp Morris International R&D, Biological Systems Research, R&D Innovation Cube T1517.07, Quai Jeanrenaud 5, CH-2000 Neuchatel, Switzerland
Marc Jacobs
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Julia Hoeng
5Philipp Morris International R&D, Biological Systems Research, R&D Innovation Cube T1517.07, Quai Jeanrenaud 5, CH-2000 Neuchatel, Switzerland
Roland Eils
7Center for Digital Health, Charité Universitätsmedizin Berlin & Berlin Institute of Health (BIH)
Carsten Claussen
2Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, ScreeningPort, 22525 Hamburg, Germany
3Fraunhofer Cluster of Excellence for Immune Mediated Diseases, CIMD, External partner site, 22525 Hamburg, Germany
Martin Hofmann-Apitius
1Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Institutszentrum Birlinghoven, 53754 Sankt Augustin, Germany
Posted February 12, 2021.
The COVID-19 PHARMACOME: A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization
Bruce Schultz, Andrea Zaliani, Christian Ebeling, Jeanette Reinshagen, Denisa Bojkova, Vanessa Lage-Rupprecht, Reagon Karki, Sören Lukassen, Yojana Gadiya, Neal G. Ravindra, Sayoni Das, Shounak Baksi, Daniel Domingo-Fernández, Manuel Lentzen, Mark Strivens, Tamara Raschka, Jindrich Cinatl, Lauren Nicole DeLong, Phil Gribbon, Gerd Geisslinger, Sandra Ciesek, David van Dijk, Steve Gardner, Alpha Tom Kodamullil, Holger Fröhlich, Manuel Peitsch, Marc Jacobs, Julia Hoeng, Roland Eils, Carsten Claussen, Martin Hofmann-Apitius
bioRxiv 2020.09.23.308239; doi: https://doi.org/10.1101/2020.09.23.308239
The COVID-19 PHARMACOME: A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization
Bruce Schultz, Andrea Zaliani, Christian Ebeling, Jeanette Reinshagen, Denisa Bojkova, Vanessa Lage-Rupprecht, Reagon Karki, Sören Lukassen, Yojana Gadiya, Neal G. Ravindra, Sayoni Das, Shounak Baksi, Daniel Domingo-Fernández, Manuel Lentzen, Mark Strivens, Tamara Raschka, Jindrich Cinatl, Lauren Nicole DeLong, Phil Gribbon, Gerd Geisslinger, Sandra Ciesek, David van Dijk, Steve Gardner, Alpha Tom Kodamullil, Holger Fröhlich, Manuel Peitsch, Marc Jacobs, Julia Hoeng, Roland Eils, Carsten Claussen, Martin Hofmann-Apitius
bioRxiv 2020.09.23.308239; doi: https://doi.org/10.1101/2020.09.23.308239
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