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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

Yatish Turakhia, Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David Haussler, View ORCID ProfileRussell Corbett-Detig
doi: https://doi.org/10.1101/2020.09.26.314971
Yatish Turakhia
1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA
2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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  • For correspondence: yturakhi@ucsc.edu rucorbet@ucsc.edu
Bryan Thornlow
1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA
2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Angie S. Hinrichs
2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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Nicola De Maio
3European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge CB10 1SD, UK
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Landen Gozashti
1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA
2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
4Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, 02138, USA
6Howard Hughes Medical Institute, University of California, Santa Cruz, CA 95064, USA
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Robert Lanfear
5Department of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, ACT 2601, Australia
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David Haussler
1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA
2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
6Howard Hughes Medical Institute, University of California, Santa Cruz, CA 95064, USA
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Russell Corbett-Detig
1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA
2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
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  • ORCID record for Russell Corbett-Detig
  • For correspondence: yturakhi@ucsc.edu rucorbet@ucsc.edu
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Posted September 28, 2020.
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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic
Yatish Turakhia, Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David Haussler, Russell Corbett-Detig
bioRxiv 2020.09.26.314971; doi: https://doi.org/10.1101/2020.09.26.314971
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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic
Yatish Turakhia, Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David Haussler, Russell Corbett-Detig
bioRxiv 2020.09.26.314971; doi: https://doi.org/10.1101/2020.09.26.314971

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