Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

Yatish Turakhia; Bryan Thornlow; Angie S. Hinrichs; Nicola De Maio; Landen Gozashti; Robert Lanfear; David Haussler; Russell Corbett-Detig

doi:10.1101/2020.09.26.314971

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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

Yatish Turakhia, Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David Haussler, View ORCID ProfileRussell Corbett-Detig

doi: https://doi.org/10.1101/2020.09.26.314971

Yatish Turakhia

1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA

2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA

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For correspondence: yturakhi@ucsc.edu rucorbet@ucsc.edu

Bryan Thornlow

1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA

2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA

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Angie S. Hinrichs

2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA

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Nicola De Maio

3European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge CB10 1SD, UK

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Landen Gozashti

1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA

2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA

4Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, 02138, USA

6Howard Hughes Medical Institute, University of California, Santa Cruz, CA 95064, USA

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Robert Lanfear

5Department of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, ACT 2601, Australia

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David Haussler

1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA

2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA

6Howard Hughes Medical Institute, University of California, Santa Cruz, CA 95064, USA

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Russell Corbett-Detig

1Department of Biomolecular Engineering, University of California Santa Cruz. Santa Cruz, CA 95064, USA

2Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA

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ORCID record for Russell Corbett-Detig
For correspondence: yturakhi@ucsc.edu rucorbet@ucsc.edu

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Posted September 28, 2020.

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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

Yatish Turakhia, Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David Haussler, Russell Corbett-Detig

bioRxiv 2020.09.26.314971; doi: https://doi.org/10.1101/2020.09.26.314971

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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

Yatish Turakhia, Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear, David Haussler, Russell Corbett-Detig

bioRxiv 2020.09.26.314971; doi: https://doi.org/10.1101/2020.09.26.314971

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