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Recapitulating the frataxin activation mechanism in an engineered bacterial cysteine desulfurase supports the architectural switch model

View ORCID ProfileShachin Patra, View ORCID ProfileCheng-Wei Lin, Manas K. Ghosh, View ORCID ProfileSteven M. Havens, Seth A. Cory, View ORCID ProfileDavid H. Russell, View ORCID ProfileDavid P. Barondeau
doi: https://doi.org/10.1101/2020.10.06.326603
Shachin Patra
Department of Chemistry, Texas A&M University, College Station, TX 77842, USA
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Cheng-Wei Lin
Department of Chemistry, Texas A&M University, College Station, TX 77842, USA
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Manas K. Ghosh
Department of Chemistry, Texas A&M University, College Station, TX 77842, USA
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Steven M. Havens
Department of Chemistry, Texas A&M University, College Station, TX 77842, USA
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Seth A. Cory
Department of Chemistry, Texas A&M University, College Station, TX 77842, USA
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David H. Russell
Department of Chemistry, Texas A&M University, College Station, TX 77842, USA
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David P. Barondeau
Department of Chemistry, Texas A&M University, College Station, TX 77842, USA
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  • For correspondence: barondeau@tamu.edu
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ABSTRACT

Iron-sulfur (Fe-S) clusters have a key role in many biochemical processes and are essential for most life forms. Despite recent mechanistic advances in understanding the Fe-S cluster biosynthetic pathway, critical questions remain unresolved. Although human NFS1 and E. coli IscS share ∼60% sequence identity, NFS1 exhibits low activity and requires activation by the Friedreich’s ataxia protein frataxin (FXN) for in vivo function. Surprisingly, structures of the human complex reveal three distinct quaternary structures with one form exhibiting the same subunit interactions as IscS. An architectural switch model has been proposed in which evolutionarily lost interactions between NFS1 subunits results in the formation of low-activity architectures; FXN binding compensates for these lost interactions and facilitates a subunit rearrangement to activate the complex. Here, we used a structure and evolution-guided approach to identify three conserved residues proposed to weaken interactions between NFS1 subunits and transplanted these amino acids into IscS. Compared to native IscS, the engineered variant had a 4000-fold weaker dimer interface and diminished activity that correlated with the absence of the second catalytic subunit. Remarkably, the addition of the FXN homolog to the engineered variant stimulated the decay of the Cys-quinonoid pyridoxal 5’-phosphate intermediate, shifted IscS from the monomeric to dimeric form, and increased the cysteine desulfurase activity, reproducing results from the human system and supporting the architectural switch model. Overall, these studies indicate a weakening of the homodimeric interface was a key development during the evolution of the eukaryotic system and provide new insights into the role of FXN.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted October 06, 2020.
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Recapitulating the frataxin activation mechanism in an engineered bacterial cysteine desulfurase supports the architectural switch model
Shachin Patra, Cheng-Wei Lin, Manas K. Ghosh, Steven M. Havens, Seth A. Cory, David H. Russell, David P. Barondeau
bioRxiv 2020.10.06.326603; doi: https://doi.org/10.1101/2020.10.06.326603
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Recapitulating the frataxin activation mechanism in an engineered bacterial cysteine desulfurase supports the architectural switch model
Shachin Patra, Cheng-Wei Lin, Manas K. Ghosh, Steven M. Havens, Seth A. Cory, David H. Russell, David P. Barondeau
bioRxiv 2020.10.06.326603; doi: https://doi.org/10.1101/2020.10.06.326603

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