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Dominant monoallelic variant in the PAK2 gene causes Knobloch syndrome type 2

View ORCID ProfileStylianos E. Antonarakis, View ORCID ProfileAles Holoubek, Melivoia Rapti, Jesse Rademaker, Jenny Meylan, View ORCID ProfileJustyna Iwaszkiewicz, Vincent Zoete, Muhammad Ansar, View ORCID ProfileChristelle Borel, Olivier Menzel, Kateřina Kuželová, View ORCID ProfileFederico A. Santoni
doi: https://doi.org/10.1101/2020.10.06.328419
Stylianos E. Antonarakis
1Department of Genetic Medicine and Development, University of Geneva Medical Faculty, Geneva 1211, Switzerland
8iGE3 Institute of Genetics and Genomics of Geneva, Geneva 1211, Switzerland
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  • For correspondence: stylianos.antonarakis@unige.ch federico.santoni@chuv.ch
Ales Holoubek
2Department of Proteomics, Institute of Hematology and Blood Transfusion, Prague, Czech Republic
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Melivoia Rapti
3Department of Endocrinology Diabetes and Metabolism, Lausanne University Hospital, Lausanne 1011, Switzerland
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Jesse Rademaker
3Department of Endocrinology Diabetes and Metabolism, Lausanne University Hospital, Lausanne 1011, Switzerland
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Jenny Meylan
3Department of Endocrinology Diabetes and Metabolism, Lausanne University Hospital, Lausanne 1011, Switzerland
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Justyna Iwaszkiewicz
4Molecular Modeling Group, Swiss Institute of Bioinformatics, Lausanne 1015, Switzerland
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Vincent Zoete
4Molecular Modeling Group, Swiss Institute of Bioinformatics, Lausanne 1015, Switzerland
5Department of Fundamental Oncology, Ludwig Institute for Cancer Research, Lausanne University, Epalinges 1066, Switzerland
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Muhammad Ansar
6Institute of Molecular and Clinical Ophthalmology, Basel 4031, Switzerland
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Christelle Borel
1Department of Genetic Medicine and Development, University of Geneva Medical Faculty, Geneva 1211, Switzerland
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Olivier Menzel
7Health 2030 Genome Center, Foundation Campus Biotech Geneva Foundation, Geneva 1202, Switzerland
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Kateřina Kuželová
2Department of Proteomics, Institute of Hematology and Blood Transfusion, Prague, Czech Republic
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Federico A. Santoni
3Department of Endocrinology Diabetes and Metabolism, Lausanne University Hospital, Lausanne 1011, Switzerland
9Faculty of Biology and Medicine, University of Lausanne, Lausanne 1011, Switzerland
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  • For correspondence: stylianos.antonarakis@unige.ch federico.santoni@chuv.ch
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Abstract

Knobloch syndrome is an autosomal recessive phenotype mainly characterized by retinal detachment and encephalocele caused by biallelic pathogenic variants in the COL18A1 gene. However, there are patients clinically diagnosed as Knobloch syndrome with unknown molecular etiology not linked to COL18A1. We studied an historical pedigree (published in 1998) designated as KNO2 (Knobloch type 2 syndrome with intellectual disability, autistic behavior, retinal degeneration, encephalocele). Whole exome sequencing of the two affected siblings and the normal parents resulted in the identification of a PAK2 non-synonymous substitution p.(Glu435Lys) as a causative variant. The variant was monoallelic and apparently de novo in both siblings indicating a likely germline mosaicism in one of the parents; the mosaicism however could not be observed after deep sequencing of blood parental DNA. PAK2 encodes a member of a small group of serine/threonine kinases; these P21-activating kinases (PAKs) are essential in signal transduction and cellular regulation (cytoskeletal dynamics, cell motility, death and survival signaling, and cell cycle progression). Structural analysis of the PAK2 p.(Glu435Lys) variant which is located in the kinase domain of the protein predicts a possible compromise in the kinase activity. Functional analysis of the p.(Glu435Lys) PAK2 variant in transfected HEK293T cells results in a partial loss of the kinase activity. PAK2 has been previously suggested as an autism related gene. Our results show that PAK2 induced phenotypic spectrum is broad and not fully understood. We conclude that the KNO2 syndrome in the studied family is dominant and caused by a deleterious variant in the PAK2 gene.

Competing Interest Statement

The authors have declared no competing interest.

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Posted October 07, 2020.
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Dominant monoallelic variant in the PAK2 gene causes Knobloch syndrome type 2
Stylianos E. Antonarakis, Ales Holoubek, Melivoia Rapti, Jesse Rademaker, Jenny Meylan, Justyna Iwaszkiewicz, Vincent Zoete, Muhammad Ansar, Christelle Borel, Olivier Menzel, Kateřina Kuželová, Federico A. Santoni
bioRxiv 2020.10.06.328419; doi: https://doi.org/10.1101/2020.10.06.328419
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Dominant monoallelic variant in the PAK2 gene causes Knobloch syndrome type 2
Stylianos E. Antonarakis, Ales Holoubek, Melivoia Rapti, Jesse Rademaker, Jenny Meylan, Justyna Iwaszkiewicz, Vincent Zoete, Muhammad Ansar, Christelle Borel, Olivier Menzel, Kateřina Kuželová, Federico A. Santoni
bioRxiv 2020.10.06.328419; doi: https://doi.org/10.1101/2020.10.06.328419

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