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Mendelian randomization identifies the potential causal impact of dietary patterns on circulating blood metabolites

View ORCID ProfileNele Taba, Hanna-Kristel Valge, View ORCID ProfileAndres Metspalu, View ORCID ProfileTõnu Esko, James F. Wilson, Krista Fischer, View ORCID ProfileNicola Pirastu
doi: https://doi.org/10.1101/2020.10.09.332924
Nele Taba
1Estonian Genome Centre, Institute of Genomics, University of Tartu, Tartu, Riia 23b, 51010, Estonia
2Institute of Molecular and Cell Biology, University of Tartu, Tartu, Riia 23, 51010, Estonia
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  • For correspondence: nele.taba@ut.ee nicola.pirastu@ed.ac.uk
Hanna-Kristel Valge
3Faculty of Medicine, University of Tartu, Tartu, Ravila 19, 50411, Estonia
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Andres Metspalu
1Estonian Genome Centre, Institute of Genomics, University of Tartu, Tartu, Riia 23b, 51010, Estonia
2Institute of Molecular and Cell Biology, University of Tartu, Tartu, Riia 23, 51010, Estonia
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Tõnu Esko
1Estonian Genome Centre, Institute of Genomics, University of Tartu, Tartu, Riia 23b, 51010, Estonia
4Program in Medical and Population Genetics, Broad Institute, 415 Main St, Cambridge, MA 02142, United States
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James F. Wilson
5Centre for Global Health Research, Usher Institute, University of Edinburgh, Teviot Place, Edinburgh, EH8 9AG, Scotland
6MRC Human Genetics Unit, Institute of Genetic and Molecular Medicine, University of Edinburgh, Western General Hospital, Crewe Road, Edinburgh, EH4 2XU, Scotland
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Krista Fischer
1Estonian Genome Centre, Institute of Genomics, University of Tartu, Tartu, Riia 23b, 51010, Estonia
7Institute of Mathematics and Statistics, University of Tartu, Tartu, Narva mnt 18, 51009, Estonia
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Nicola Pirastu
5Centre for Global Health Research, Usher Institute, University of Edinburgh, Teviot Place, Edinburgh, EH8 9AG, Scotland
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  • ORCID record for Nicola Pirastu
  • For correspondence: nele.taba@ut.ee nicola.pirastu@ed.ac.uk
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Abstract

Nutrition plays an important role in the development and progress of several health conditions, but the exact mechanism is often still unclear. Blood metabolites are likely candidates to be mediating these relationships, as their levels are strongly dependent on the frequency of consumption of several foods/drinks. Understanding the causal effect of food on metabolites is thus of extreme importance. To establish these effects we utilized Two-sample Mendelian randomization using the genetic variants associated with dietary traits as instrumental variables. The estimates of single-nucleotide polymorphisms’ effects on exposures were obtained from a recent genome-wide association study (GWAS) of 25 individual and 15 principal-component dietary traits, whereas the ones for outcomes were obtained from a GWAS of 123 blood metabolites measured by nuclear magnetic resonance spectroscopy. We identified 417 potentially causal links between food and metabolites, replicating previous findings, such as the association between increased oily fish consumption and higher DHA, and highlighting several novel associations. Most of the associations were related to very-low-density, intermediate-density (IDL) and low-density lipoproteins (LDL). For example, we found that constituents of IDL particles and large LDL particles were raised by coffee and alcohol while lowered by an overall healthier diet and fruit consumption. Our results represent one of the first examples of the estimates of long-term causal effects of diet on metabolites and start bridging the gap in the mechanistic understanding linking food consumption to its health consequences.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted October 09, 2020.
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Mendelian randomization identifies the potential causal impact of dietary patterns on circulating blood metabolites
Nele Taba, Hanna-Kristel Valge, Andres Metspalu, Tõnu Esko, James F. Wilson, Krista Fischer, Nicola Pirastu
bioRxiv 2020.10.09.332924; doi: https://doi.org/10.1101/2020.10.09.332924
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Mendelian randomization identifies the potential causal impact of dietary patterns on circulating blood metabolites
Nele Taba, Hanna-Kristel Valge, Andres Metspalu, Tõnu Esko, James F. Wilson, Krista Fischer, Nicola Pirastu
bioRxiv 2020.10.09.332924; doi: https://doi.org/10.1101/2020.10.09.332924

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