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Genetic Landscape of Gullah African Americans

Kip D. Zimmerman, View ORCID ProfileTheodore G. Schurr, Wei-Min Chen, Uma Nayak, Josyf C. Mychaleckyj, Queen Quet, Lee H. Moultrie, Jasmin Divers, Keith L. Keene, Diane L. Kamen, Gary S. Gilkeson, Kelly J. Hunt, Ida J. Spruill, Jyotika K. Fernandes, View ORCID ProfileMelinda C. Aldrich, View ORCID ProfileDavid Reich, W. Timothy Garvey, Carl D. Langefeld, Michèle M. Sale, View ORCID ProfilePaula S. Ramos
doi: https://doi.org/10.1101/2020.10.12.336347
Kip D. Zimmerman
1Department of Biostatistical Sciences, Wake Forest School of Medicine, Winston-Salem, North Carolina, USA
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Theodore G. Schurr
2Department of Anthropology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
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Wei-Min Chen
3Center for Public Health Genomics, University of Virginia, Charlottesville, Virginia, USA
4Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia, USA
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Uma Nayak
3Center for Public Health Genomics, University of Virginia, Charlottesville, Virginia, USA
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Josyf C. Mychaleckyj
3Center for Public Health Genomics, University of Virginia, Charlottesville, Virginia, USA
4Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia, USA
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Queen Quet
5Gullah/Geechee Nation, St. Helena Island, South Carolina, USA
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Lee H. Moultrie
6Lee H. Moultrie & Associates, North Charleston, South Carolina, USA
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Jasmin Divers
7Department of Health Services Research, New York University Winthrop Hospital, Mineola, New York, USA
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Keith L. Keene
8Department of Biology, East Carolina University, Greenville, North Carolina, USA
9Center for Health Disparities, East Carolina University Brody School of Medicine, Greenville, North Carolina, USA
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Diane L. Kamen
10Department of Medicine, Medical University of South Carolina, Charleston, South Carolina, USA
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Gary S. Gilkeson
10Department of Medicine, Medical University of South Carolina, Charleston, South Carolina, USA
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Kelly J. Hunt
11Department of Public Health Sciences, Medical University of South Carolina, South Carolina, USA
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Ida J. Spruill
12College of Nursing, Medical University of South Carolina, Charleston, South Carolina, USA
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Jyotika K. Fernandes
10Department of Medicine, Medical University of South Carolina, Charleston, South Carolina, USA
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Melinda C. Aldrich
13Department of Thoracic Surgery, Vanderbilt University Medical Center, Nashville, Tennessee, USA
14Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA
15Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, USA
16Vanderbilt Genetics Institute, Vanderbilt University Medical Center, Nashville, Tennessee, USA
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David Reich
17Department of Genetics, Harvard Medical School, Boston, Massachusetts, USA
18Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts, USA
19Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
20Department of Human Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA
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W. Timothy Garvey
21Department of Nutrition Science, University of Alabama at Birmingham, Birmingham, Alabama, USA
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Carl D. Langefeld
1Department of Biostatistical Sciences, Wake Forest School of Medicine, Winston-Salem, North Carolina, USA
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Michèle M. Sale
3Center for Public Health Genomics, University of Virginia, Charlottesville, Virginia, USA
4Department of Public Health Sciences, University of Virginia, Charlottesville, Virginia, USA
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Paula S. Ramos
10Department of Medicine, Medical University of South Carolina, Charleston, South Carolina, USA
11Department of Public Health Sciences, Medical University of South Carolina, South Carolina, USA
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  • For correspondence: ramosp@musc.edu
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Abstract

Objectives Gullah African Americans are descendants of formerly enslaved Africans living in the Sea Islands along the coast of the southeastern U.S., from North Carolina to Florida. Their relatively high numbers and geographic isolation were conducive to the development and preservation of a unique culture that retains deep African features. Although historical evidence supports a West and Central African ancestry for the Gullah, linguistic and cultural evidence of a connection to Sierra Leone has led to the suggestion of this country/region as their ancestral home. This study sought to elucidate the genetic structure and ancestry of the Gullah.

Materials and Methods We leveraged whole-genome genotype data from Gullah, African Americans from Jackson, Mississippi, Sierra Leone Africans, and population reference panels from Africa and Europe, to infer population structure, ancestry proportions, and global estimates of admixture.

Results Relative to southeastern non-Gullah African Americans, the Gullah exhibit higher mean African ancestry, lower European admixture, a similarly small Native American contribution, and stronger male-biased European admixture. A slightly tighter bottleneck in the Gullah 13 generations ago suggests a largely shared demographic history with non-Gullah African Americans. Despite a slightly higher relatedness to Sierra Leone, our data demonstrate that the Gullah are genetically related to many West African populations.

Discussion This study confirms that subtle differences in African American population structure exist at finer regional levels. Such observations can help to inform medical genetics research in African Americans, and guide the interpretation of genetic data used by African Americans seeking to explore ancestral identities.

Research Highlights

  • Using genomic data, we show that the Gullah have lower European and higher West African genomic background compared to non-Gullah African Americans, confirming their diverse African ancestry and rejecting a model that asserts a predominant Sierra Leone origin.

  • Our data reveal a largely shared demographic history with southeastern non-Gullah African Americans, but also subtle differences related to high African genetic ancestry due to isolation in the Sea Islands.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵† This work is dedicated to Ida Spruill and Michèle Sale, deceased.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Genetic Landscape of Gullah African Americans
Kip D. Zimmerman, Theodore G. Schurr, Wei-Min Chen, Uma Nayak, Josyf C. Mychaleckyj, Queen Quet, Lee H. Moultrie, Jasmin Divers, Keith L. Keene, Diane L. Kamen, Gary S. Gilkeson, Kelly J. Hunt, Ida J. Spruill, Jyotika K. Fernandes, Melinda C. Aldrich, David Reich, W. Timothy Garvey, Carl D. Langefeld, Michèle M. Sale, Paula S. Ramos
bioRxiv 2020.10.12.336347; doi: https://doi.org/10.1101/2020.10.12.336347
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Genetic Landscape of Gullah African Americans
Kip D. Zimmerman, Theodore G. Schurr, Wei-Min Chen, Uma Nayak, Josyf C. Mychaleckyj, Queen Quet, Lee H. Moultrie, Jasmin Divers, Keith L. Keene, Diane L. Kamen, Gary S. Gilkeson, Kelly J. Hunt, Ida J. Spruill, Jyotika K. Fernandes, Melinda C. Aldrich, David Reich, W. Timothy Garvey, Carl D. Langefeld, Michèle M. Sale, Paula S. Ramos
bioRxiv 2020.10.12.336347; doi: https://doi.org/10.1101/2020.10.12.336347

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