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The ubiquitylome of developing cortical neurons

Shalini Menon, Dennis Goldfarb, Emily M. Cousins, M. Ben Major, View ORCID ProfileStephanie L. Gupton
doi: https://doi.org/10.1101/2020.10.13.337782
Shalini Menon
1University of North Carolina at Chapel Hill, Department of Cell Biology and Physiology, Chapel Hill, NC 27599, USA
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Dennis Goldfarb
2University of North Carolina at Chapel Hill, Lineberger Comprehensive Cancer Center, Chapel Hill, NC 27599, USA
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Emily M. Cousins
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M. Ben Major
1University of North Carolina at Chapel Hill, Department of Cell Biology and Physiology, Chapel Hill, NC 27599, USA
2University of North Carolina at Chapel Hill, Lineberger Comprehensive Cancer Center, Chapel Hill, NC 27599, USA
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Stephanie L. Gupton
1University of North Carolina at Chapel Hill, Department of Cell Biology and Physiology, Chapel Hill, NC 27599, USA
2University of North Carolina at Chapel Hill, Lineberger Comprehensive Cancer Center, Chapel Hill, NC 27599, USA
3University of North Carolina at Chapel Hill, Neuroscience Center, Chapel Hill, NC 27599, USA
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  • ORCID record for Stephanie L. Gupton
  • For correspondence: sgupton@unc.edu
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Abstract

TRIM9 and TRIM67 are neuronally-enriched E3 ubiquitin. Both genes are required for neuronal morphological responses to the axon guidance cue netrin-1. For example, our previously published work demonstrated that the actin polymerase VASP and the netrin receptor DCC exhibit TRIM9 dependent ubiquitylation that is lost upon netrin stimulation. Deletion of either gene in the mouse results in subtle neuroanatomical anomalies yet overt deficits in spatial learning and memory. Despite their role in neuronal form and function, the identity of few TRIM9 or TRIM67 substrates are known. Here we performed ubiquitin remnant profiling approach in cultured wildtype and knockout murine embryonic cortical neurons to identify ubiquitylated peptides and proteins, with the ultimate goal of identifying substrates of TRIM9 and TRIM67 that exhibited reduced ubiquitylation in the absence of the ligase. This work reveals the ubiquitylome of developing cortical neurons.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted October 14, 2020.
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The ubiquitylome of developing cortical neurons
Shalini Menon, Dennis Goldfarb, Emily M. Cousins, M. Ben Major, Stephanie L. Gupton
bioRxiv 2020.10.13.337782; doi: https://doi.org/10.1101/2020.10.13.337782
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The ubiquitylome of developing cortical neurons
Shalini Menon, Dennis Goldfarb, Emily M. Cousins, M. Ben Major, Stephanie L. Gupton
bioRxiv 2020.10.13.337782; doi: https://doi.org/10.1101/2020.10.13.337782

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