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3D test sample for the calibration and quality control of super-resolution and confocal microscopes

View ORCID ProfileErnest B. van der Wee, Jantina Fokkema, View ORCID ProfileChris L. Kennedy, View ORCID ProfileMarc del Pozo, View ORCID ProfileD.A. Matthijs de Winter, Peter N.A. Speets, View ORCID ProfileHans C. Gerritsen, View ORCID ProfileAlfons van Blaaderen
doi: https://doi.org/10.1101/2020.10.14.336032
Ernest B. van der Wee
1Soft Condensed Matter and Molecular Biophysics, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, the Netherlands
2Department of Imaging Physics, Delft University of Technology, Lorentzweg 1, 2628 CJ Delft, the Netherlands
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Jantina Fokkema
1Soft Condensed Matter and Molecular Biophysics, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, the Netherlands
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Chris L. Kennedy
1Soft Condensed Matter and Molecular Biophysics, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, the Netherlands
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Marc del Pozo
1Soft Condensed Matter and Molecular Biophysics, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, the Netherlands
3Stimuli-responsive Functional Materials and Devices, Department of Chemical Engineering, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, the Netherlands
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D.A. Matthijs de Winter
1Soft Condensed Matter and Molecular Biophysics, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, the Netherlands
4Hydrogeology, Department of Earth Sciences, Utrecht University, Princetonlaan 8a, 3584 CB Utrecht, the Netherlands
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Peter N.A. Speets
1Soft Condensed Matter and Molecular Biophysics, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, the Netherlands
2Department of Imaging Physics, Delft University of Technology, Lorentzweg 1, 2628 CJ Delft, the Netherlands
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Hans C. Gerritsen
1Soft Condensed Matter and Molecular Biophysics, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, the Netherlands
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Alfons van Blaaderen
1Soft Condensed Matter and Molecular Biophysics, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 1, 3584 CC Utrecht, the Netherlands
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  • For correspondence: A.vanBlaaderen@uu.nl
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Abstract

A multitude of samples is required to monitor and optimize the quality and reliability of quantitative measurements of (super-resolution) light microscopes. Here, we present a single sample to calibrate microscopes, align their laser beams and measure their point spread function (PSF) in 3D. The sample is composed of a refractive index matched colloidal crystal of silica beads with fluorescent and gold cores. The microscope can be calibrated in three dimensions using the periodicity of the crystal; the alignment of the laser beams can be checked using the reflection of the gold cores; and the PSF can be measured at multiple positions and depths using the fluorescent cores. It is demonstrated how this sample can be used to visualize and improve the quality of confocal and super-resolution images. The sample is adjustable to meet the requirements of different NA objectives and microscopy techniques and additionally can be used to evaluate refractive index mismatches as a function of depth quantitatively.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted October 14, 2020.
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3D test sample for the calibration and quality control of super-resolution and confocal microscopes
Ernest B. van der Wee, Jantina Fokkema, Chris L. Kennedy, Marc del Pozo, D.A. Matthijs de Winter, Peter N.A. Speets, Hans C. Gerritsen, Alfons van Blaaderen
bioRxiv 2020.10.14.336032; doi: https://doi.org/10.1101/2020.10.14.336032
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3D test sample for the calibration and quality control of super-resolution and confocal microscopes
Ernest B. van der Wee, Jantina Fokkema, Chris L. Kennedy, Marc del Pozo, D.A. Matthijs de Winter, Peter N.A. Speets, Hans C. Gerritsen, Alfons van Blaaderen
bioRxiv 2020.10.14.336032; doi: https://doi.org/10.1101/2020.10.14.336032

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