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Mosaic changes to the global transcriptome in response to inhibiting ribosome formation versus inhibition of ribosome function

Md Shamsuzzaman, Nusrat Rahman, Brian Gregory, Vincent M Bruno, Lasse Lindahl
doi: https://doi.org/10.1101/2020.10.15.341230
Md Shamsuzzaman
1Department of Biological Sciences, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250, USA
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Nusrat Rahman
1Department of Biological Sciences, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250, USA
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Brian Gregory
1Department of Biological Sciences, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250, USA
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Vincent M Bruno
2Institute for Genome Sciences, Health Sciences Facility III, 670 West Baltimore St, Baltimore 21201, Maryland, USA
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Lasse Lindahl
1Department of Biological Sciences, University of Maryland Baltimore County, 1000 Hilltop Circle, Baltimore, Maryland 21250, USA
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  • For correspondence: lindahl@umbc.edu
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Abstract

Cell fate is susceptible to several internal and external stresses. Stress resulting from mutations in genes for ribosomal proteins and assembly factors leads to many congenital diseases, collectively called ribosomopathies. Even though such mutations all depress the cell’s protein synthesis capacity, they are manifested in many different phenotypes. This prompted us to use Saccharomyces cerevisiae to explore whether reducing the protein synthesis capacity by different mechanisms result in the same or different changes to the global transcriptome. We have compared the transcriptome after abolishing the assembly of new ribosomes and inhibiting the translocation of ribosomes on the mRNA. Our results show that these alternate obstructions generate different mosaics of expression for several classes of genes, including genes for ribosomal proteins, mitotic cell cycle, cell wall synthesis, and protein transport.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted October 15, 2020.
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Mosaic changes to the global transcriptome in response to inhibiting ribosome formation versus inhibition of ribosome function
Md Shamsuzzaman, Nusrat Rahman, Brian Gregory, Vincent M Bruno, Lasse Lindahl
bioRxiv 2020.10.15.341230; doi: https://doi.org/10.1101/2020.10.15.341230
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Mosaic changes to the global transcriptome in response to inhibiting ribosome formation versus inhibition of ribosome function
Md Shamsuzzaman, Nusrat Rahman, Brian Gregory, Vincent M Bruno, Lasse Lindahl
bioRxiv 2020.10.15.341230; doi: https://doi.org/10.1101/2020.10.15.341230

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