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Multivalency transforms SARS-CoV-2 antibodies into broad and ultrapotent neutralizers

Edurne Rujas, Iga Kucharska, Yong Zi Tan, Samir Benlekbir, Hong Cui, Tiantian Zhao, Gregory A. Wasney, Patrick Budylowski, Furkan Guvenc, Jocelyn C. Newton, Taylor Sicard, Anthony Semesi, Krithika Muthuraman, Amy Nouanesengsy, Katherine Prieto, Stephanie A. Bueler, Sawsan Youssef, Sindy Liao-Chan, Jacob Glanville, Natasha Christie-Holmes, Samira Mubareka, Scott D. Gray-Owen, John L. Rubinstein, Bebhinn Treanor, Jean-Philippe Julien
doi: https://doi.org/10.1101/2020.10.15.341636
Edurne Rujas
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
2Department of Biochemistry, University of Toronto, Toronto, ON, Canada
3Biofisika Institute (CSIC, UPV/EHU) and Department of Biochemistry and Molecular Biology, University of the Basque Country (UPV/EHU), Bilbao, Spain
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Iga Kucharska
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Yong Zi Tan
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Samir Benlekbir
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Hong Cui
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Tiantian Zhao
4Department of Immunology, University of Toronto, Toronto, ON, Canada
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Gregory A. Wasney
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
5The Structural & Biophysical Core Facility, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Patrick Budylowski
6Combined Containment Level 3 Unit, University of Toronto, Toronto, ON, Canada
7Institute of Medical Science, University of Toronto, Toronto, ON, Canada
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Furkan Guvenc
6Combined Containment Level 3 Unit, University of Toronto, Toronto, ON, Canada
8Department of Molecular Genetics, University of Toronto, ON, Canada
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Jocelyn C. Newton
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Taylor Sicard
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
2Department of Biochemistry, University of Toronto, Toronto, ON, Canada
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Anthony Semesi
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Krithika Muthuraman
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Amy Nouanesengsy
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
2Department of Biochemistry, University of Toronto, Toronto, ON, Canada
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Katherine Prieto
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Stephanie A. Bueler
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
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Sawsan Youssef
9Distributed Bio, South San Francisco, CA, United States
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Sindy Liao-Chan
9Distributed Bio, South San Francisco, CA, United States
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Jacob Glanville
9Distributed Bio, South San Francisco, CA, United States
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Natasha Christie-Holmes
6Combined Containment Level 3 Unit, University of Toronto, Toronto, ON, Canada
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Samira Mubareka
10Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada
11Sunnybrook Health Sciences Centre, Toronto, ON, Canada
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Scott D. Gray-Owen
8Department of Molecular Genetics, University of Toronto, ON, Canada
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John L. Rubinstein
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
2Department of Biochemistry, University of Toronto, Toronto, ON, Canada
12Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada
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Bebhinn Treanor
4Department of Immunology, University of Toronto, Toronto, ON, Canada
13Department of Cell and Systems Biology, University of Toronto, ON, Canada
14Department of Biological Sciences, University of Toronto Scarborough, Toronto, ON, Canada
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Jean-Philippe Julien
1Program in Molecular Medicine, The Hospital for Sick Children Research Institute, Toronto, ON, Canada
2Department of Biochemistry, University of Toronto, Toronto, ON, Canada
4Department of Immunology, University of Toronto, Toronto, ON, Canada
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  • For correspondence: jean-philippe.julien@sickkids.ca
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Abstract

The novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes Coronavirus Disease 2019 (COVID-19), has caused a global pandemic. Antibodies are powerful biotherapeutics to fight viral infections; however, discovery of the most potent and broadly acting clones can be lengthy. Here, we used the human apoferritin protomer as a modular subunit to drive oligomerization of antibody fragments and transform antibodies targeting SARS-CoV-2 into exceptionally potent neutralizers. Using this platform, half-maximal inhibitory concentration (IC50) values as low as 9 × 10−14 M were achieved as a result of up to 10,000-fold potency enhancements. Combination of three different antibody specificities and the fragment crystallizable (Fc) domain on a single multivalent molecule conferred the ability to overcome viral sequence variability together with outstanding potency and Ig-like in vivo bioavailability. This MULTi-specific, multi-Affinity antiBODY (Multabody; or MB) platform contributes a new class of medical countermeasures against COVID-19 and an efficient approach to rapidly deploy potent and broadly-acting therapeutics against infectious diseases of global health importance.

One Sentence Summary multimerization platform transforms antibodies emerging from discovery screens into potent neutralizers that can overcome SARS-CoV-2 sequence diversity.

Competing Interest Statement

The Hospital for Sick Children has applied for patents concerning SARS-CoV-2 antibodies and the Multabody platform technology that are related to this work. BT and JPJ are founders of Radiant Biotherapeutics and are members of its Scientific Advisory Board. SY, SLC and JG are employees of DistributedBio and may hold shares in DistributedBio. All other authors declare no competing interests.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted October 16, 2020.
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Multivalency transforms SARS-CoV-2 antibodies into broad and ultrapotent neutralizers
Edurne Rujas, Iga Kucharska, Yong Zi Tan, Samir Benlekbir, Hong Cui, Tiantian Zhao, Gregory A. Wasney, Patrick Budylowski, Furkan Guvenc, Jocelyn C. Newton, Taylor Sicard, Anthony Semesi, Krithika Muthuraman, Amy Nouanesengsy, Katherine Prieto, Stephanie A. Bueler, Sawsan Youssef, Sindy Liao-Chan, Jacob Glanville, Natasha Christie-Holmes, Samira Mubareka, Scott D. Gray-Owen, John L. Rubinstein, Bebhinn Treanor, Jean-Philippe Julien
bioRxiv 2020.10.15.341636; doi: https://doi.org/10.1101/2020.10.15.341636
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Multivalency transforms SARS-CoV-2 antibodies into broad and ultrapotent neutralizers
Edurne Rujas, Iga Kucharska, Yong Zi Tan, Samir Benlekbir, Hong Cui, Tiantian Zhao, Gregory A. Wasney, Patrick Budylowski, Furkan Guvenc, Jocelyn C. Newton, Taylor Sicard, Anthony Semesi, Krithika Muthuraman, Amy Nouanesengsy, Katherine Prieto, Stephanie A. Bueler, Sawsan Youssef, Sindy Liao-Chan, Jacob Glanville, Natasha Christie-Holmes, Samira Mubareka, Scott D. Gray-Owen, John L. Rubinstein, Bebhinn Treanor, Jean-Philippe Julien
bioRxiv 2020.10.15.341636; doi: https://doi.org/10.1101/2020.10.15.341636

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