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A drug-screening platform based on organotypic cultures identifies vulnerabilities to prevent local relapse and treat established brain metastasis

Lucía Zhu, Natalia Yebra, Diana Retana, Lauritz Miarka, Elena Hernández-Encinas, View ORCID ProfileCarmen Blanco-Aparicio, View ORCID ProfileSonia Martínez, View ORCID ProfileRiccardo Soffietti, View ORCID ProfileLuca Bertero, Paola Cassoni, View ORCID ProfileTobias Weiss, View ORCID ProfileJavier Muñoz, View ORCID ProfileJuan Manuel Sepúlveda, Ángel Pérez-Núñez, View ORCID ProfileAurelio Hernández-Laín, Yolanda Ruano, Oscar Toldos, Eduardo Caleiras, View ORCID ProfileDiego Megías, View ORCID ProfileOsvaldo Graña-Castro, Carolina Nör, Michael D. Taylor, Lorena Cussó, View ORCID ProfileManuel Desco, View ORCID ProfileMichael Weller, Joaquín Pastor, View ORCID ProfileManuel Valiente
doi: https://doi.org/10.1101/2020.10.16.329243
Lucía Zhu
1Brain Metastasis Group; CNIO; Madrid, 28003; Spain
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Natalia Yebra
1Brain Metastasis Group; CNIO; Madrid, 28003; Spain
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Diana Retana
1Brain Metastasis Group; CNIO; Madrid, 28003; Spain
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Lauritz Miarka
1Brain Metastasis Group; CNIO; Madrid, 28003; Spain
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Elena Hernández-Encinas
2Experimental Therapeutics Programme; CNIO; Madrid, 28003; Spain
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Carmen Blanco-Aparicio
2Experimental Therapeutics Programme; CNIO; Madrid, 28003; Spain
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Sonia Martínez
2Experimental Therapeutics Programme; CNIO; Madrid, 28003; Spain
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Riccardo Soffietti
3Department of Neuro-Oncology; University and City of Health and Science Hospital; Turin, 10126; Italy
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Luca Bertero
4Department of Medical Sciences/ Pathology Unit; University of Turin; Turin, 10124; Italy
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Paola Cassoni
4Department of Medical Sciences/ Pathology Unit; University of Turin; Turin, 10124; Italy
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Tobias Weiss
5Department of Neurology and Brain Tumor Center; University Hospital Zurich and University of Zurich; Zurich, 8091; Switzerland
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Javier Muñoz
6Proteomics Unit; CNIO; Madrid, 28003; Spain. ProteoRedISCIII
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Juan Manuel Sepúlveda
7Neuro-Oncology Unit; Hospital Universitario 12 de Octubre; Madrid, 28041; Spain
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Ángel Pérez-Núñez
8Neurosurgery Unit; Hospital Universitario 12 de Octubre; Madrid, 28041; Spain
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Aurelio Hernández-Laín
9Neuropathology Unit; Hospital Universitario 12 de Octubre; Madrid, 28041; Spain
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Yolanda Ruano
9Neuropathology Unit; Hospital Universitario 12 de Octubre; Madrid, 28041; Spain
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Oscar Toldos
9Neuropathology Unit; Hospital Universitario 12 de Octubre; Madrid, 28041; Spain
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Eduardo Caleiras
10Histopathology Unit; CNIO; Madrid, 28003; Spain
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Diego Megías
11Confocal Microscopy Unit; CNIO; Madrid, 28003; Spain
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Osvaldo Graña-Castro
12Bioinformatics Unit; CNIO; Madrid, 28003; Spain
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Carolina Nör
13Developmental and Stem Cell Biology Program and The Arthur and Sonia Labatt Brain Tumour Research Centre; The Hospital for Sick Children; Toronto, M5G 1X8; Canada
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Michael D. Taylor
13Developmental and Stem Cell Biology Program and The Arthur and Sonia Labatt Brain Tumour Research Centre; The Hospital for Sick Children; Toronto, M5G 1X8; Canada
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Lorena Cussó
14Departamento de Bioingeniería e Ingeniería Aeroespacial; Universidad Carlos III de Madrid; Madrid, 28911; Spain
15Instituto de Investigación Sanitaria Gregorio Marañón; Madrid, 28007; Spain
16Centro de Investigación Biomédica en Red de Salud Mental (CIBERSAM); Spain
17Unidad de Imagen Avanzada; Centro Nacional de Investigaciones Cardiovasculares (CNIC); Madrid, 28003; Spain
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Manuel Desco
14Departamento de Bioingeniería e Ingeniería Aeroespacial; Universidad Carlos III de Madrid; Madrid, 28911; Spain
15Instituto de Investigación Sanitaria Gregorio Marañón; Madrid, 28007; Spain
16Centro de Investigación Biomédica en Red de Salud Mental (CIBERSAM); Spain
17Unidad de Imagen Avanzada; Centro Nacional de Investigaciones Cardiovasculares (CNIC); Madrid, 28003; Spain
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Michael Weller
6Proteomics Unit; CNIO; Madrid, 28003; Spain. ProteoRedISCIII
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Joaquín Pastor
2Experimental Therapeutics Programme; CNIO; Madrid, 28003; Spain
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Manuel Valiente
1Brain Metastasis Group; CNIO; Madrid, 28003; Spain
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  • For correspondence: mvaliente@cnio.es
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Abstract

Exclusion of brain metastases from clinical trials is a major cause of the limited therapeutic options for this growing population of cancer patients. Here, we report a medium-throughput drug-screening platform (METPlatform) based on organotypic cultures that allows to evaluate inhibitors against metastases growing in situ. By applying this approach to brain metastasis, we identified several hits from a library of FDA approved inhibitors and others being tested in clinical trials. A blood-brain barrier permeable HSP90 inhibitor showed high potency against mouse and human brain metastases at clinically relevant stages of the disease, including a novel model of local relapse after neurosurgery. Furthermore, in situ proteomic analysis applied to organotypic cultures with metastases treated with the chaperone inhibitor revealed novel biomarkers in human brain metastasis and actionable mechanisms of resistance. Our work validates METPlatform as a potent resource for metastasis research integrating drug-screening and unbiased omic approaches that is fully compatible with human samples. We envision that METPlatform could be established as a clinically relevant strategy to personalize the management of metastatic disease in the brain and elsewhere.

Summary Systemic spread of cancer continues to be the key aspect associated with lethality. In this publication, Zhu et al. describes a drug-screening platform specifically designed to study vulnerabilities of metastasis when colonizing secondary organs and demonstrates its value in difficult-to-treat brain metastasis using new models and patient-derived samples.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • In this revised version the co-author Diana Retana has been added to match the PDF document.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted October 19, 2020.
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A drug-screening platform based on organotypic cultures identifies vulnerabilities to prevent local relapse and treat established brain metastasis
Lucía Zhu, Natalia Yebra, Diana Retana, Lauritz Miarka, Elena Hernández-Encinas, Carmen Blanco-Aparicio, Sonia Martínez, Riccardo Soffietti, Luca Bertero, Paola Cassoni, Tobias Weiss, Javier Muñoz, Juan Manuel Sepúlveda, Ángel Pérez-Núñez, Aurelio Hernández-Laín, Yolanda Ruano, Oscar Toldos, Eduardo Caleiras, Diego Megías, Osvaldo Graña-Castro, Carolina Nör, Michael D. Taylor, Lorena Cussó, Manuel Desco, Michael Weller, Joaquín Pastor, Manuel Valiente
bioRxiv 2020.10.16.329243; doi: https://doi.org/10.1101/2020.10.16.329243
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A drug-screening platform based on organotypic cultures identifies vulnerabilities to prevent local relapse and treat established brain metastasis
Lucía Zhu, Natalia Yebra, Diana Retana, Lauritz Miarka, Elena Hernández-Encinas, Carmen Blanco-Aparicio, Sonia Martínez, Riccardo Soffietti, Luca Bertero, Paola Cassoni, Tobias Weiss, Javier Muñoz, Juan Manuel Sepúlveda, Ángel Pérez-Núñez, Aurelio Hernández-Laín, Yolanda Ruano, Oscar Toldos, Eduardo Caleiras, Diego Megías, Osvaldo Graña-Castro, Carolina Nör, Michael D. Taylor, Lorena Cussó, Manuel Desco, Michael Weller, Joaquín Pastor, Manuel Valiente
bioRxiv 2020.10.16.329243; doi: https://doi.org/10.1101/2020.10.16.329243

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