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HPF1-dependent PARP activation promotes LIG3-XRCC1-mediated backup pathway of Okazaki fragment ligation

View ORCID ProfileSoichiro Kumamoto, View ORCID ProfileAtsuya Nishiyama, View ORCID ProfileYoshie Chiba, View ORCID ProfileRyota Miyashita, View ORCID ProfileChieko Konishi, View ORCID ProfileYoshiaki Azuma, View ORCID ProfileMakoto Nakanishi
doi: https://doi.org/10.1101/2020.10.21.348292
Soichiro Kumamoto
1Division of Cancer Cell Biology, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
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Atsuya Nishiyama
1Division of Cancer Cell Biology, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
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  • For correspondence: mkt-naka@g.ecc.u-tokyo.ac.jp uanishiyama@g.ecc.u-tokyo.ac.jp
Yoshie Chiba
1Division of Cancer Cell Biology, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
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Ryota Miyashita
1Division of Cancer Cell Biology, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
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Chieko Konishi
1Division of Cancer Cell Biology, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
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Yoshiaki Azuma
2Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, 66045, U.S.A
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Makoto Nakanishi
1Division of Cancer Cell Biology, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
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  • For correspondence: mkt-naka@g.ecc.u-tokyo.ac.jp uanishiyama@g.ecc.u-tokyo.ac.jp
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ABSTRACT

DNA Ligase 1 (LIG1) is known as the major DNA ligase responsible for Okazaki fragment joining. Recent studies have implicated LIG3 complexed with XRCC1 as an alternative player in Okazaki fragment joining in cases where LIG1 is not functional, although the underlying mechanisms are largely unknown. Here, using a cell-free system derived from Xenopus egg extracts, we demonstrated the essential role of PARP1-HPF1 in LIG3-dependent Okazaki fragment joining. We found that Okazaki fragments were eventually ligated even in the absence of LIG1, employing in its place LIG3-XRCC1 which was recruited onto chromatins. Concomitantly, LIG1 deficiency induces ADP-ribosylation of histone H3 in a PARP1-HPF1-dependent manner. The depletion of PARP1 or HPF1 resulted in a failure to recruit LIG3 onto chromatin and a subsequent failure in Okazaki fragment joining in LIG1-depleted extracts. Importantly, Okazaki fragments were not ligated at all when LIG1 and XRCC1 were co-depleted. Our results suggest that a unique form of ADP-ribosylation signalling promotes the recruitment of LIG3 on chromatins and its mediation of Okazaki fragment joining as a backup system for LIG1 perturbation.

Competing Interest Statement

The authors have declared no competing interest.

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Posted October 21, 2020.
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HPF1-dependent PARP activation promotes LIG3-XRCC1-mediated backup pathway of Okazaki fragment ligation
Soichiro Kumamoto, Atsuya Nishiyama, Yoshie Chiba, Ryota Miyashita, Chieko Konishi, Yoshiaki Azuma, Makoto Nakanishi
bioRxiv 2020.10.21.348292; doi: https://doi.org/10.1101/2020.10.21.348292
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HPF1-dependent PARP activation promotes LIG3-XRCC1-mediated backup pathway of Okazaki fragment ligation
Soichiro Kumamoto, Atsuya Nishiyama, Yoshie Chiba, Ryota Miyashita, Chieko Konishi, Yoshiaki Azuma, Makoto Nakanishi
bioRxiv 2020.10.21.348292; doi: https://doi.org/10.1101/2020.10.21.348292

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