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GWAS analysis combined with QTL mapping identify CPT3 and ABH as genes underlying dolichol accumulation in Arabidopsis

Katarzyna Gawarecka, Joanna Siwinska, Jaroslaw Poznanski, Agnieszka Onysk, Przemyslaw Surowiecki, Liliana Surmacz, Ji Hoon Ahn, View ORCID ProfileArthur Korte, View ORCID ProfileEwa Swiezewska, View ORCID ProfileAnna Ihnatowicz
doi: https://doi.org/10.1101/2020.10.21.348912
Katarzyna Gawarecka
1Institute of Biochemistry and Biophysics Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warszawa, Poland
3Department of Life Sciences, Korea University, Seoul, Korea
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Joanna Siwinska
2Intercollegiate Faculty of Biotechnology of University of Gdansk and Medical University of Gdansk, Abrahama 58, 80-307 Gdansk, Poland
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Jaroslaw Poznanski
1Institute of Biochemistry and Biophysics Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warszawa, Poland
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Agnieszka Onysk
1Institute of Biochemistry and Biophysics Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warszawa, Poland
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Przemyslaw Surowiecki
1Institute of Biochemistry and Biophysics Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warszawa, Poland
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Liliana Surmacz
1Institute of Biochemistry and Biophysics Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warszawa, Poland
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Ji Hoon Ahn
3Department of Life Sciences, Korea University, Seoul, Korea
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Arthur Korte
4Center for Computational and Theoretical Biology, University of Wurzburg, Emil-Fischer Strasse 32, 97074 Wurzburg, Germany
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  • ORCID record for Arthur Korte
Ewa Swiezewska
1Institute of Biochemistry and Biophysics Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warszawa, Poland
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  • For correspondence: anna.ihnatowicz@biotech.ug.edu.pl ewas@ibb.waw.pl
Anna Ihnatowicz
2Intercollegiate Faculty of Biotechnology of University of Gdansk and Medical University of Gdansk, Abrahama 58, 80-307 Gdansk, Poland
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  • For correspondence: anna.ihnatowicz@biotech.ug.edu.pl ewas@ibb.waw.pl
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ABSTRACT

Dolichols (Dols), ubiquitous components of living organisms, are indispensable for cell survival. In plants, as well as other eukaryotes, Dols are crucial for posttranslational protein glycosylation, aberration of which leads to fatal metabolic disorders in humans. Until now, the regulatory mechanisms underlying Dol accumulation remain elusive. In this report, we have analyzed the natural variation of the accumulation of Dols and six other isoprenoids between 120 Arabidopsis thaliana accessions. Subsequently, by combining QTL and GWAS approaches, we have identified several candidate genes involved in the accumulation of Dols, polyprenols, plastoquinone, and phytosterols. The role of two genes implicated in the accumulation of major Dols in Arabidopsis – the AT2G17570 gene encoding a long searched for cis-prenyltransferase (CPT3) and the AT1G52460 gene encoding an alpha-beta hydrolase (ABH) – is experimentally confirmed. These data will help to generate Dol-enriched plants which might serve as a remedy for Dol-deficiency in humans.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted October 21, 2020.
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GWAS analysis combined with QTL mapping identify CPT3 and ABH as genes underlying dolichol accumulation in Arabidopsis
Katarzyna Gawarecka, Joanna Siwinska, Jaroslaw Poznanski, Agnieszka Onysk, Przemyslaw Surowiecki, Liliana Surmacz, Ji Hoon Ahn, Arthur Korte, Ewa Swiezewska, Anna Ihnatowicz
bioRxiv 2020.10.21.348912; doi: https://doi.org/10.1101/2020.10.21.348912
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GWAS analysis combined with QTL mapping identify CPT3 and ABH as genes underlying dolichol accumulation in Arabidopsis
Katarzyna Gawarecka, Joanna Siwinska, Jaroslaw Poznanski, Agnieszka Onysk, Przemyslaw Surowiecki, Liliana Surmacz, Ji Hoon Ahn, Arthur Korte, Ewa Swiezewska, Anna Ihnatowicz
bioRxiv 2020.10.21.348912; doi: https://doi.org/10.1101/2020.10.21.348912

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