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Structural basis of inhibition of a putative drug efflux transporter NorC, through a single-domain camelid antibody

View ORCID ProfileSushant Kumar, View ORCID ProfileArunabh Athreya, View ORCID ProfileAshutosh Gulati, View ORCID ProfileRahul Mony Nair, View ORCID ProfileAravind Penmatsa
doi: https://doi.org/10.1101/2020.10.21.349639
Sushant Kumar
1Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India
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Arunabh Athreya
1Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India
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Ashutosh Gulati
1Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India
3Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden
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Rahul Mony Nair
1Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India
4Rudolf Virchow Center for Integrative and Translational Bioimaging, University of Würzburg, Würzburg, Germany
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Aravind Penmatsa
1Molecular Biophysics Unit, Indian Institute of Science, Bangalore, 560012, India
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  • For correspondence: penmatsa@iisc.ac.in
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Abstract

Multi-drug efflux is a major mechanism of acquiring antimicrobial resistance among superbugs. In this study, we report the X-ray structure of NorC, a 14 transmembrane major facilitator superfamily member that is implicated in fluoroquinolone resistance in drug-resistant Staphylococcus aureus strains, at a resolution of 3.6 Å. The NorC structure was determined in complex with a single-domain camelid antibody that interacts at the extracellular face of the transporter and stabilizes it in an outward-open conformation. The complementarity determining regions of the antibody enter and block solvent access to the interior of the vestibule, thereby inhibiting alternating-access. NorC specifically interacts with an organic cation, tetraphenylphosphonium, although it does not demonstrate an ability to transport it. The interaction is compromised in the presence of NorC-antibody complex, consequently establishing a strategy to detect and block NorC and related efflux pumps through the use of single- domain camelid antibodies.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted October 22, 2020.
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Structural basis of inhibition of a putative drug efflux transporter NorC, through a single-domain camelid antibody
Sushant Kumar, Arunabh Athreya, Ashutosh Gulati, Rahul Mony Nair, Aravind Penmatsa
bioRxiv 2020.10.21.349639; doi: https://doi.org/10.1101/2020.10.21.349639
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Structural basis of inhibition of a putative drug efflux transporter NorC, through a single-domain camelid antibody
Sushant Kumar, Arunabh Athreya, Ashutosh Gulati, Rahul Mony Nair, Aravind Penmatsa
bioRxiv 2020.10.21.349639; doi: https://doi.org/10.1101/2020.10.21.349639

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