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DAGBagM: Learning directed acyclic graphs of mixed variables with an application to identify prognostic protein biomarkers in ovarian cancer

Shrabanti Chowdhury, Ru Wang, Qing Yu, Catherine J. Huntoon, Larry M. Karnitz, Scott H. Kaufmann, Steven P. Gygi, Michael J. Birrer, Amanda G. Paulovich, Jie Peng, Pei Wang
doi: https://doi.org/10.1101/2020.10.26.349076
Shrabanti Chowdhury
1, New York, NY 10029, USA
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Ru Wang
2Department of Statistics, University of California, Davis, CA 95616
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Qing Yu
3Department of Cell Biology, Harvard Medical School, Boston, MA 02115
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Catherine J. Huntoon
4, 200 First Street SW, Gonda 19-300, Rochester, MN 55905
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Larry M. Karnitz
4, 200 First Street SW, Gonda 19-300, Rochester, MN 55905
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Scott H. Kaufmann
5Division of Oncology Research, Mayo Clinic, Rochester, MN 55905
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Steven P. Gygi
3Department of Cell Biology, Harvard Medical School, Boston, MA 02115
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Michael J. Birrer
6, Little Rock, AR 72205-7199
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Amanda G. Paulovich
7, Seattle, WA 98109
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Jie Peng
2Department of Statistics, University of California, Davis, CA 95616
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  • For correspondence: jiepeng@ucdavis.edu
Pei Wang
1, New York, NY 10029, USA
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  • For correspondence: pei.wang@mssm.edu
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Article Information

doi 
https://doi.org/10.1101/2020.10.26.349076
History 
  • October 27, 2020.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.

Author Information

  1. Shrabanti Chowdhury1,
  2. Ru Wang2,
  3. Qing Yu3,
  4. Catherine J. Huntoon4,
  5. Larry M. Karnitz4,
  6. Scott H. Kaufmann5,
  7. Steven P. Gygi3,
  8. Michael J. Birrer6,
  9. Amanda G. Paulovich7,
  10. Jie Peng2,* and
  11. Pei Wang1,†
  1. 1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA
  2. 2Department of Statistics, University of California, Davis, CA 95616
  3. 3Department of Cell Biology, Harvard Medical School, Boston, MA 02115
  4. 4Division of Oncology Research and Department of Oncology, Mayo Clinic, 200 First Street SW, Gonda 19-300, Rochester, MN 55905
  5. 5Division of Oncology Research, Mayo Clinic, Rochester, MN 55905
  6. 6Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, AR 72205-7199
  7. 7Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109
  1. ↵*co-correspondence author: jiepeng{at}ucdavis.edu
  2. ↵†co-correspondence author: pei.wang{at}mssm.edu
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Posted October 27, 2020.
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DAGBagM: Learning directed acyclic graphs of mixed variables with an application to identify prognostic protein biomarkers in ovarian cancer
Shrabanti Chowdhury, Ru Wang, Qing Yu, Catherine J. Huntoon, Larry M. Karnitz, Scott H. Kaufmann, Steven P. Gygi, Michael J. Birrer, Amanda G. Paulovich, Jie Peng, Pei Wang
bioRxiv 2020.10.26.349076; doi: https://doi.org/10.1101/2020.10.26.349076
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DAGBagM: Learning directed acyclic graphs of mixed variables with an application to identify prognostic protein biomarkers in ovarian cancer
Shrabanti Chowdhury, Ru Wang, Qing Yu, Catherine J. Huntoon, Larry M. Karnitz, Scott H. Kaufmann, Steven P. Gygi, Michael J. Birrer, Amanda G. Paulovich, Jie Peng, Pei Wang
bioRxiv 2020.10.26.349076; doi: https://doi.org/10.1101/2020.10.26.349076

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