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Ten complete mitochondrial genomes of Gymnocharacini (Stethaprioninae, Characiformes): evolutionary relationships and a repetitive element in the Control Region (D-loop)

View ORCID ProfileRubens Pasa, Fabiano Bezerra Menegídio, Igor Henrique Rodrigues-Oliveira, Iuri Batista da Silva, Matheus Lewi Cruz Bonaccorsi de Campos, Dinaíza Abadia Rocha-Reis, John Seymour (Pat) Heslop-Harrison, Trude Schwarzacher, Karine Frehner Kavalco
doi: https://doi.org/10.1101/2020.10.26.355867
Rubens Pasa
1Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, campus Rio Paranaíba, Rio Paranaíba, Brazil
3Laboratory of Bioinformatics and Genomics, Federal University of Viçosa, campus Rio Paranaíba, Brazil
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  • For correspondence: rpasa@ufv.br
Fabiano Bezerra Menegídio
2Integrated Nucleus of Biotechnology, University of Mogi das Cruzes, Brazil
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Igor Henrique Rodrigues-Oliveira
1Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, campus Rio Paranaíba, Rio Paranaíba, Brazil
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Iuri Batista da Silva
1Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, campus Rio Paranaíba, Rio Paranaíba, Brazil
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Matheus Lewi Cruz Bonaccorsi de Campos
1Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, campus Rio Paranaíba, Rio Paranaíba, Brazil
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Dinaíza Abadia Rocha-Reis
1Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, campus Rio Paranaíba, Rio Paranaíba, Brazil
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John Seymour (Pat) Heslop-Harrison
4Department of Genetics and Genome Biology, University of Leicester, United Kingdom
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Trude Schwarzacher
4Department of Genetics and Genome Biology, University of Leicester, United Kingdom
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Karine Frehner Kavalco
1Laboratory of Ecological and Evolutionary Genetics, Federal University of Viçosa, campus Rio Paranaíba, Rio Paranaíba, Brazil
3Laboratory of Bioinformatics and Genomics, Federal University of Viçosa, campus Rio Paranaíba, Brazil
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Abstract

We are presenting the complete mitogenomes of eight fish species/cytotypes from Neotropical region belonging to the Astyanax and Psalidodon genus: A. aeneus, A. altiparanae, P. fasciatus (from two locations - Upper Paraná and São Francisco river basins), A. lacustris, P. rivularis (two cytotypes) and P. rioparanaibano. We perform the whole-genome sequencing for six of these species in a Novaseq 6000 - by Illumina, meanwhile two genomes were assembled from raw data available in databases. Plus, we reassembled and annotated the mitochondrial genomes for A. mexicanus and P. paranae, both already described and with raw data available online. All the genomes presented the same organization, with 13 protein-coding genes, 22 tRNA genes and two rRNA genes. Aiming to contribute to the understanding of the several cryptic species complexes and phylogeny of the genus, we perform Bayesian analysis using the 13 protein-coding genes from these species, plus Deuterodon giton and using a Brycon species as outgroup.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Declaration of Interest: none

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted October 26, 2020.
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Ten complete mitochondrial genomes of Gymnocharacini (Stethaprioninae, Characiformes): evolutionary relationships and a repetitive element in the Control Region (D-loop)
Rubens Pasa, Fabiano Bezerra Menegídio, Igor Henrique Rodrigues-Oliveira, Iuri Batista da Silva, Matheus Lewi Cruz Bonaccorsi de Campos, Dinaíza Abadia Rocha-Reis, John Seymour (Pat) Heslop-Harrison, Trude Schwarzacher, Karine Frehner Kavalco
bioRxiv 2020.10.26.355867; doi: https://doi.org/10.1101/2020.10.26.355867
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Ten complete mitochondrial genomes of Gymnocharacini (Stethaprioninae, Characiformes): evolutionary relationships and a repetitive element in the Control Region (D-loop)
Rubens Pasa, Fabiano Bezerra Menegídio, Igor Henrique Rodrigues-Oliveira, Iuri Batista da Silva, Matheus Lewi Cruz Bonaccorsi de Campos, Dinaíza Abadia Rocha-Reis, John Seymour (Pat) Heslop-Harrison, Trude Schwarzacher, Karine Frehner Kavalco
bioRxiv 2020.10.26.355867; doi: https://doi.org/10.1101/2020.10.26.355867

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