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COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

View ORCID ProfileMarek Ostaszewski, View ORCID ProfileAnna Niarakis, View ORCID ProfileAlexander Mazein, View ORCID ProfileInna Kuperstein, View ORCID ProfileRobert Phair, View ORCID ProfileAurelio Orta-Resendiz, Vidisha Singh, Sara Sadat Aghamiri, View ORCID ProfileMarcio Luis Acencio, View ORCID ProfileEnrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frischman, Luis Cristóbal Monraz Gómez, Julia Somers, View ORCID ProfileMatti Hoch, View ORCID ProfileShailendra Kumar Gupta, View ORCID ProfileJulia Scheel, Hanna Borlinghaus, View ORCID ProfileTobias Czauderna, Falk Schreiber, View ORCID ProfileArnau Montagud, View ORCID ProfileMiguel Ponce de Leon, View ORCID ProfileAkira Funahashi, View ORCID ProfileYusuke Hiki, View ORCID ProfileNoriko Hiroi, View ORCID ProfileTakahiro G. Yamada, View ORCID ProfileAndreas Dräger, View ORCID ProfileAlina Renz, View ORCID ProfileMuhammad Naveez, View ORCID ProfileZsolt Bocskei, View ORCID ProfileFrancesco Messina, View ORCID ProfileDaniela Börnigen, View ORCID ProfileLiam Fergusson, View ORCID ProfileMarta Conti, Marius Rameil, Vanessa Nakonecnij, View ORCID ProfileJakob Vanhoefer, View ORCID ProfileLeonard Schmiester, Muying Wang, View ORCID ProfileEmily E. Ackerman, Jason Shoemaker, View ORCID ProfileJeremy Zucker, View ORCID ProfileKristie Oxford, View ORCID ProfileJeremy Teuton, View ORCID ProfileEbru Kocakaya, View ORCID ProfileGökçe Yağmur Summak, View ORCID ProfileKristina Hanspers, View ORCID ProfileMartina Kutmon, View ORCID ProfileSusan Coort, View ORCID ProfileLars Eijssen, View ORCID ProfileFriederike Ehrhart, View ORCID ProfileD. A. B. Rex, View ORCID ProfileDenise Slenter, View ORCID ProfileMarvin Martens, View ORCID ProfileRobin Haw, View ORCID ProfileBijay Jassal, View ORCID ProfileLisa Matthews, View ORCID ProfileMarija Orlic-Milacic, View ORCID ProfileAndrea Senff Ribeiro, View ORCID ProfileKaren Rothfels, View ORCID ProfileVeronica Shamovsky, View ORCID ProfileRalf Stephan, View ORCID ProfileCristoffer Sevilla, View ORCID ProfileThawfeek Varusai, View ORCID ProfileJean-Marie Ravel, View ORCID ProfileRupsha Fraser, View ORCID ProfileVera Ortseifen, Silvia Marchesi, View ORCID ProfilePiotr Gawron, Ewa Smula, View ORCID ProfileLaurent Heirendt, View ORCID ProfileVenkata Satagopam, View ORCID ProfileGuanming Wu, View ORCID ProfileAnders Riutta, View ORCID ProfileMartin Golebiewski, View ORCID ProfileStuart Owen, View ORCID ProfileCarole Goble, Xiaoming Hu, View ORCID ProfileRupert W. Overall, Dieter Maier, View ORCID ProfileAngela Bauch, View ORCID ProfileBenjamin M. Gyori, View ORCID ProfileJohn A. Bachman, View ORCID ProfileCarlos Vega, View ORCID ProfileValentin Grouès, View ORCID ProfileMiguel Vazquez, View ORCID ProfilePablo Porras, View ORCID ProfileLuana Licata, View ORCID ProfileMarta Iannuccelli, Francesca Sacco, View ORCID ProfileAnastasia Nesterova, Anton Yuryev, View ORCID ProfileAnita de Waard, View ORCID ProfileDenes Turei, View ORCID ProfileAugustin Luna, View ORCID ProfileOzgun Babur, View ORCID ProfileSylvain Soliman, View ORCID ProfileAlberto Valdeolivas, View ORCID ProfileMarina Esteban-Medina, View ORCID ProfileMaria Peña-Chilet, View ORCID ProfileTomáš Helikar, View ORCID ProfileBhanwar Lal Puniya, View ORCID ProfileDezso Modos, View ORCID ProfileAgatha Treveil, View ORCID ProfileMarton Olbei, View ORCID ProfileBertrand De Meulder, View ORCID ProfileAurélien Dugourd, View ORCID ProfileAurelien Naldi, View ORCID ProfileVincent Noel, View ORCID ProfileLaurence Calzone, View ORCID ProfileChris Sander, View ORCID ProfileEmek Demir, View ORCID ProfileTamas Korcsmaros, View ORCID ProfileTom C. Freeman, Franck Augé, View ORCID ProfileJacques S. Beckmann, View ORCID ProfileJan Hasenauer, View ORCID ProfileOlaf Wolkenhauer, View ORCID ProfileEgon L. Wilighagen, View ORCID ProfileAlexander R. Pico, View ORCID ProfileChris T. Evelo, View ORCID ProfileMarc E. Gillespie, View ORCID ProfileLincoln D. Stein, View ORCID ProfileHenning Hermjakob, View ORCID ProfilePeter D’Eustachio, View ORCID ProfileJulio Saez-Rodriguez, View ORCID ProfileJoaquin Dopazo, View ORCID ProfileAlfonso Valencia, Hiroaki Kitano, View ORCID ProfileEmmanuel Barillot, View ORCID ProfileCharles Auffray, View ORCID ProfileRudi Balling, View ORCID ProfileReinhard Schneider, the COVID-19 Disease Map Community
doi: https://doi.org/10.1101/2020.10.26.356014
Marek Ostaszewski
1Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
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  • ORCID record for Marek Ostaszewski
  • For correspondence: marek.ostaszewski@uni.lu
Anna Niarakis
2Department of Biology, Univ. Evry, University of Paris-Saclay, GenHotel, Genopole, 91025, Evry, France
3Lifeware Group, Inria Saclay-Ile de France, Palaiseau 91120, France
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  • ORCID record for Anna Niarakis
Alexander Mazein
1Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
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Inna Kuperstein
4Institut Curie, PSL Research University, Paris, France. INSERM, U900, Paris, France
5MINES ParisTech, PSL Research University, Paris, France
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Robert Phair
6Integrative Bioinformatics, Inc., 346 Paul Ave, Mountain View, CA, USA
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Aurelio Orta-Resendiz
7Institut Pasteur, HIV, Inflammation and Persistence Unit, Paris, France
8Bio Sorbonne Paris Cité, Université de Paris, Paris, France
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Vidisha Singh
2Department of Biology, Univ. Evry, University of Paris-Saclay, GenHotel, Genopole, 91025, Evry, France
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Sara Sadat Aghamiri
9Inserm-Institut national de la santé et de la recherche médicale. Saint-Louis Hospital 1 avenue Claude Vellefaux Pavillon Bazin 75475 Paris
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Marcio Luis Acencio
1Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
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Enrico Glaab
1Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
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Andreas Ruepp
10Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany
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Gisela Fobo
10Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany
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Corinna Montrone
10Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany
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Barbara Brauner
10Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany
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Goar Frischman
10Institute of Experimental Genetics (IEG), Helmholtz Zentrum München-German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany
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Luis Cristóbal Monraz Gómez
4Institut Curie, PSL Research University, Paris, France. INSERM, U900, Paris, France
5MINES ParisTech, PSL Research University, Paris, France
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Julia Somers
11Oregon Health & Sciences Univerity; Department of Molecular and Medical Genetics; 3222 SW Research Drive, Portland, Oregon, U.S.A 97239
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Matti Hoch
12Department of Systems Biology and Bioinformatics, University of Rostock, 18051 Rostock, Germany
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Shailendra Kumar Gupta
12Department of Systems Biology and Bioinformatics, University of Rostock, 18051 Rostock, Germany
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  • ORCID record for Shailendra Kumar Gupta
Julia Scheel
12Department of Systems Biology and Bioinformatics, University of Rostock, 18051 Rostock, Germany
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Hanna Borlinghaus
13Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
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Tobias Czauderna
14Monash University, Faculty of Information Technology, Department of Human-Centred Computing, Wellington Rd, Clayton VIC 3800, Australia
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Falk Schreiber
13Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
14Monash University, Faculty of Information Technology, Department of Human-Centred Computing, Wellington Rd, Clayton VIC 3800, Australia
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Arnau Montagud
15Barcelona Supercomputing Center (BSC), Barcelona, Spain
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Miguel Ponce de Leon
15Barcelona Supercomputing Center (BSC), Barcelona, Spain
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Akira Funahashi
16Keio University, Department of Biosciences and Informatics, 3-14-1 Hiyoshi Kouhoku-ku Yokohama Japan 223-8522
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Yusuke Hiki
16Keio University, Department of Biosciences and Informatics, 3-14-1 Hiyoshi Kouhoku-ku Yokohama Japan 223-8522
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Noriko Hiroi
16Keio University, Department of Biosciences and Informatics, 3-14-1 Hiyoshi Kouhoku-ku Yokohama Japan 223-8522
17Sanyo-Onoda City University, Faculty of Pharmaceutical Sciences, University St.1-1-1, Yamaguchi, Japan 756-0884
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Takahiro G. Yamada
16Keio University, Department of Biosciences and Informatics, 3-14-1 Hiyoshi Kouhoku-ku Yokohama Japan 223-8522
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Andreas Dräger
18Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), University of Tübingen, 72076 Tübingen, Germany
19Department of Computer Science, University of Tübingen, 72076 Tübingen, Germany
20German Center for Infection Research (DZIF), partner site Tübingen, Germany
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Alina Renz
18Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), University of Tübingen, 72076 Tübingen, Germany
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Muhammad Naveez
12Department of Systems Biology and Bioinformatics, University of Rostock, 18051 Rostock, Germany
21Riga Technical University, Institute of Applied Computer Systems, 1 Kalku Street, LV-1658 Riga, Latvia
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Zsolt Bocskei
22Sanofi R&D, Translational Sciences, 1 av Pierre Brossolette 91395 Chilly-Mazarin France
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Francesco Messina
23Dipartimento di Epidemiologia Ricerca Pre-Clinica e Diagnostica Avanzata, National Institute for Infectious Diseases ‘Lazzaro Spallanzani’ I.R.C.C.S., Rome, Italy
24COVID 19 INMI Network Medicine for IDs Study Group, National Institute for Infectious Diseases ‘Lazzaro Spallanzani’ I.R.C.C.S., Rome, Italy
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Daniela Börnigen
25Bioinformatics Core Facility, Universitätsklinikum Hamburg-Eppendorf, Martinistraße 52, 20246 Hamburg, Germany
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Liam Fergusson
26The University of Edinburgh, Royal (Dick) School of Veterinary Medicine, Easter Bush Campus, Midlothian, EH25 9RG
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Marta Conti
27Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany
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Marius Rameil
27Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany
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Vanessa Nakonecnij
27Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany
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Jakob Vanhoefer
27Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany
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Leonard Schmiester
28Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Computational Biology, 85764 Neuherberg, Germany
29Technische Universität München, Center for Mathematics, Chair of Mathematical Modeling of Biological Systems, 85748 Garching, Germany
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Muying Wang
30Department of Chemical and Petroleum Engineering, University of Pittsburgh
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Emily E. Ackerman
30Department of Chemical and Petroleum Engineering, University of Pittsburgh
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Jason Shoemaker
30Department of Chemical and Petroleum Engineering, University of Pittsburgh
31Department of Computational and Systems Biology, University of Pittsburgh
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Jeremy Zucker
32Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, US
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Kristie Oxford
32Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, US
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Jeremy Teuton
32Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, US
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Ebru Kocakaya
33Ankara University, Stem Cell Institute, Ceyhun Atif Kansu St. No: 169 06520 Cevizlidere, Ankara, Turkey
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Gökçe Yağmur Summak
33Ankara University, Stem Cell Institute, Ceyhun Atif Kansu St. No: 169 06520 Cevizlidere, Ankara, Turkey
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Kristina Hanspers
34Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, US
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Martina Kutmon
35Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands
36Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, Maastricht, The Netherlands
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Susan Coort
35Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands
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Lars Eijssen
35Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands
37Maastricht University Medical Centre, Universiteitssingel 50, 6229 ER Maastricht, The Netherlands
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Friederike Ehrhart
35Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands
37Maastricht University Medical Centre, Universiteitssingel 50, 6229 ER Maastricht, The Netherlands
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D. A. B. Rex
38Center for Systems Biology and Molecular Medicine, Yenepoya (Deemed to be University), Mangalore 575018, India
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Denise Slenter
35Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands
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Marvin Martens
35Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, The Netherlands
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  • ORCID record for Marvin Martens
Robin Haw
39Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510, Toronto, Ontario, Canada M5G 0A3
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Bijay Jassal
39Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510, Toronto, Ontario, Canada M5G 0A3
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Lisa Matthews
40NYU Grossman School of Medicine, New York NY 10016, US
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Marija Orlic-Milacic
39Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510, Toronto, Ontario, Canada M5G 0A3
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Andrea Senff Ribeiro
39Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510, Toronto, Ontario, Canada M5G 0A3
41Universidade Federal do Paraná, Brasil
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Karen Rothfels
39Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510, Toronto, Ontario, Canada M5G 0A3
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Veronica Shamovsky
42NYU Langone Medical Center, New York, USA
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Ralf Stephan
39Ontario Institute for Cancer Research, MaRS Centre, 661 University Avenue, Suite 510, Toronto, Ontario, Canada M5G 0A3
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Cristoffer Sevilla
43EMBL-EBI, Molecular Systems, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD
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Thawfeek Varusai
43EMBL-EBI, Molecular Systems, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD
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Jean-Marie Ravel
44University of Lorraine, INSERM UMR_S 1256, Nutrition, Genetics, and Environmental Risk Exposure (NGERE), Faculty of Medicine of Nancy, F-54000 Nancy, France
45Laboratoire de génétique médicale, CHRU Nancy, Nancy, France
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Rupsha Fraser
46The University of Edinburgh, Queen’s Medical Research Institute. 47 Little France Crescent, Edinburgh, EH16 4TJ
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Vera Ortseifen
47Senior Research Group in Genome Research of Industrial Microorganisms, Center for Biotechnology, Bielefeld University, Universitätsstraße 27, 33615 Bielefeld, Germany
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Silvia Marchesi
48Uppsala University, Sweden
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Piotr Gawron
1Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
49Poznan University of Technology, Institute of Computing Science, ul. Piotrowo 2, 60-965 Poznan, Poland
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Ewa Smula
1Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
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Laurent Heirendt
1Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
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Venkata Satagopam
1Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg
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Guanming Wu
50Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, 3181 S.W. Sam Jackson Park Road, Portland, OR 97239-3098, USA
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Anders Riutta
34Institute of Data Science and Biotechnology, Gladstone Institutes, San Francisco, CA 94158, US
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  • ORCID record for Anders Riutta
Martin Golebiewski
51Heidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
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Stuart Owen
52The University of Manchester, Department of Computer Science, Oxford Road, Manchester, M13 9PL, UK
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Carole Goble
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Dezso Modos
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68Quadram Institute Bioscience, Rosalind Franklin Road, Norwich Research Park, Norwich, NR4 7UQ, UK
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28Helmholtz Zentrum München - German Research Center for Environmental Health, Institute of Computational Biology, 85764 Neuherberg, Germany
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79Okinawa Institute of Science and Technology Graduate School
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4Institut Curie, PSL Research University, Paris, France. INSERM, U900, Paris, France
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80FAIRDOMHub:
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Abstract

We hereby describe a large-scale community effort to build an open-access, interoperable, and computable repository of COVID-19 molecular mechanisms - the COVID-19 Disease Map. We discuss the tools, platforms, and guidelines necessary for the distributed development of its contents by a multi-faceted community of biocurators, domain experts, bioinformaticians, and computational biologists. We highlight the role of relevant databases and text mining approaches in enrichment and validation of the curated mechanisms. We describe the contents of the map and their relevance to the molecular pathophysiology of COVID-19 and the analytical and computational modelling approaches that can be applied to the contents of the COVID-19 Disease Map for mechanistic data interpretation and predictions. We conclude by demonstrating concrete applications of our work through several use cases.

Competing Interest Statement

D. Maier and A. Renz are employed at Biomax Informatics AG and will be affected by any effect of this publication on the commercial version of the AILANI software. J.A. Bachman and B. Gyori received consulting fees from Two Six Labs, LLC. T. Helikar has served as a shareholder and/or has consulted for Discovery Collective, Inc. R. Balling and R. Schneider are founders and shareholders of MEGENO S.A. and ITTM S.A. Remaining authors have declared no competing interests.

Footnotes

  • http://doi.org/10.17881/covid19-disease-map

  • https://fairdomhub.org/projects/190

  • 4 https://docs.google.com/document/d/1DFfJZe2xjXrKMHorp-7hlqWoNVSmx6sIzAaRzXgtQs

  • 5 https://reactome.org/community/training

  • 6 https://www.wikipathways.org/index.php/Help:Editing_Pathways

  • 7 http://celldesigner.org

  • 8 https://newteditor.org

  • 9 https://github.com/sbgn/ySBGN

  • 12 https://www.imexconsortium.org

  • 13 https://signor.uniroma2.it/covid/

  • 14 https://pathwaystudio.com

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta-Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frischman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G. Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E. Ackerman, Jason Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, D. A. B. Rex, Denise Slenter, Marvin Martens, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W. Overall, Dieter Maier, Angela Bauch, Benjamin M. Gyori, John A. Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Aurélien Dugourd, Aurelien Naldi, Vincent Noel, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C. Freeman, Franck Augé, Jacques S. Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L. Wilighagen, Alexander R. Pico, Chris T. Evelo, Marc E. Gillespie, Lincoln D. Stein, Henning Hermjakob, Peter D’Eustachio, Julio Saez-Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID-19 Disease Map Community
bioRxiv 2020.10.26.356014; doi: https://doi.org/10.1101/2020.10.26.356014
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COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta-Resendiz, Vidisha Singh, Sara Sadat Aghamiri, Marcio Luis Acencio, Enrico Glaab, Andreas Ruepp, Gisela Fobo, Corinna Montrone, Barbara Brauner, Goar Frischman, Luis Cristóbal Monraz Gómez, Julia Somers, Matti Hoch, Shailendra Kumar Gupta, Julia Scheel, Hanna Borlinghaus, Tobias Czauderna, Falk Schreiber, Arnau Montagud, Miguel Ponce de Leon, Akira Funahashi, Yusuke Hiki, Noriko Hiroi, Takahiro G. Yamada, Andreas Dräger, Alina Renz, Muhammad Naveez, Zsolt Bocskei, Francesco Messina, Daniela Börnigen, Liam Fergusson, Marta Conti, Marius Rameil, Vanessa Nakonecnij, Jakob Vanhoefer, Leonard Schmiester, Muying Wang, Emily E. Ackerman, Jason Shoemaker, Jeremy Zucker, Kristie Oxford, Jeremy Teuton, Ebru Kocakaya, Gökçe Yağmur Summak, Kristina Hanspers, Martina Kutmon, Susan Coort, Lars Eijssen, Friederike Ehrhart, D. A. B. Rex, Denise Slenter, Marvin Martens, Robin Haw, Bijay Jassal, Lisa Matthews, Marija Orlic-Milacic, Andrea Senff Ribeiro, Karen Rothfels, Veronica Shamovsky, Ralf Stephan, Cristoffer Sevilla, Thawfeek Varusai, Jean-Marie Ravel, Rupsha Fraser, Vera Ortseifen, Silvia Marchesi, Piotr Gawron, Ewa Smula, Laurent Heirendt, Venkata Satagopam, Guanming Wu, Anders Riutta, Martin Golebiewski, Stuart Owen, Carole Goble, Xiaoming Hu, Rupert W. Overall, Dieter Maier, Angela Bauch, Benjamin M. Gyori, John A. Bachman, Carlos Vega, Valentin Grouès, Miguel Vazquez, Pablo Porras, Luana Licata, Marta Iannuccelli, Francesca Sacco, Anastasia Nesterova, Anton Yuryev, Anita de Waard, Denes Turei, Augustin Luna, Ozgun Babur, Sylvain Soliman, Alberto Valdeolivas, Marina Esteban-Medina, Maria Peña-Chilet, Tomáš Helikar, Bhanwar Lal Puniya, Dezso Modos, Agatha Treveil, Marton Olbei, Bertrand De Meulder, Aurélien Dugourd, Aurelien Naldi, Vincent Noel, Laurence Calzone, Chris Sander, Emek Demir, Tamas Korcsmaros, Tom C. Freeman, Franck Augé, Jacques S. Beckmann, Jan Hasenauer, Olaf Wolkenhauer, Egon L. Wilighagen, Alexander R. Pico, Chris T. Evelo, Marc E. Gillespie, Lincoln D. Stein, Henning Hermjakob, Peter D’Eustachio, Julio Saez-Rodriguez, Joaquin Dopazo, Alfonso Valencia, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID-19 Disease Map Community
bioRxiv 2020.10.26.356014; doi: https://doi.org/10.1101/2020.10.26.356014

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