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SARS-CoV-2 spike D614G variant confers enhanced replication and transmissibility

Bin Zhou, Tran Thi Nhu Thao, Donata Hoffmann, Adriano Taddeo, Nadine Ebert, Fabien Labroussaa, Anne Pohlmann, Jacqueline King, Jasmine Portmann, Nico Joel Halwe, Lorenz Ulrich, Bettina Salome Trüeb, Jenna N. Kelly, Xiaoyu Fan, Bernd Hoffmann, Silvio Steiner, Li Wang, Lisa Thomann, Xudong Lin, Hanspeter Stalder, Berta Pozzi, Simone de Brot, Nannan Jiang, Dan Cui, Jaber Hossain, Malania Wilson, Matthew Keller, Thomas J. Stark, John R. Barnes, View ORCID ProfileRonald Dijkman, Joerg Jores, Charaf Benarafa, David E. Wentworth, Volker Thiel, Martin Beer
doi: https://doi.org/10.1101/2020.10.27.357558
Bin Zhou
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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Tran Thi Nhu Thao
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
4Graduate School for Biomedical Science, University of Bern, Bern, Switzerland
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Donata Hoffmann
5Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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Adriano Taddeo
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Nadine Ebert
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Fabien Labroussaa
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
6Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Anne Pohlmann
5Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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Jacqueline King
5Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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Jasmine Portmann
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Nico Joel Halwe
5Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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Lorenz Ulrich
5Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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Bettina Salome Trüeb
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
6Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Jenna N. Kelly
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Xiaoyu Fan
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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Bernd Hoffmann
5Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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Silvio Steiner
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
4Graduate School for Biomedical Science, University of Bern, Bern, Switzerland
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Li Wang
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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Lisa Thomann
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Xudong Lin
7Battelle Memorial Institute, Atlanta, Georgia, United States of America
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Hanspeter Stalder
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Berta Pozzi
8Institute of Cell Biology, University of Bern, Bern, Switzerland
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Simone de Brot
9COMPATH, Institute of Animal Pathology, University of Bern, Bern, Switzerland
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Nannan Jiang
10Oak Ridge Institute for Science and Education, Oak Ridge, Tennessee, United States of America
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Dan Cui
7Battelle Memorial Institute, Atlanta, Georgia, United States of America
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Jaber Hossain
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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Malania Wilson
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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Matthew Keller
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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Thomas J. Stark
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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John R. Barnes
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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Ronald Dijkman
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
11Institute for Infectious Diseases, University of Bern, Bern, Switzerland
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  • ORCID record for Ronald Dijkman
Joerg Jores
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
6Institute of Veterinary Bacteriology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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Charaf Benarafa
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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  • For correspondence: volker.thiel@vetsuisse.unibe.ch martin.beer@fli.de dwentworth@cdc.gov charaf.benarafa@vetsuisse.unibe.ch
David E. Wentworth
1CDC COVID-19 Response, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
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  • For correspondence: volker.thiel@vetsuisse.unibe.ch martin.beer@fli.de dwentworth@cdc.gov charaf.benarafa@vetsuisse.unibe.ch
Volker Thiel
2Institute of Virology and Immunology (IVI), Bern and Mittelhäusern, Switzerland
3Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
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  • For correspondence: volker.thiel@vetsuisse.unibe.ch martin.beer@fli.de dwentworth@cdc.gov charaf.benarafa@vetsuisse.unibe.ch
Martin Beer
5Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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  • For correspondence: volker.thiel@vetsuisse.unibe.ch martin.beer@fli.de dwentworth@cdc.gov charaf.benarafa@vetsuisse.unibe.ch
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Abstract

During the evolution of SARS-CoV-2 in humans a D614G substitution in the spike (S) protein emerged and became the predominant circulating variant (S-614G) of the COVID-19 pandemic1. However, whether the increasing prevalence of the S-614G variant represents a fitness advantage that improves replication and/or transmission in humans or is merely due to founder effects remains elusive. Here, we generated isogenic SARS-CoV-2 variants and demonstrate that the S-614G variant has (i) enhanced binding to human ACE2, (ii) increased replication in primary human bronchial and nasal airway epithelial cultures as well as in a novel human ACE2 knock-in mouse model, and (iii) markedly increased replication and transmissibility in hamster and ferret models of SARS-CoV-2 infection. Collectively, our data show that while the S-614G substitution results in subtle increases in binding and replication in vitro, it provides a real competitive advantage in vivo, particularly during the transmission bottle neck, providing an explanation for the global predominance of S-614G variant among the SARS-CoV-2 viruses currently circulating.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵§ these authors jointly supervised

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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SARS-CoV-2 spike D614G variant confers enhanced replication and transmissibility
Bin Zhou, Tran Thi Nhu Thao, Donata Hoffmann, Adriano Taddeo, Nadine Ebert, Fabien Labroussaa, Anne Pohlmann, Jacqueline King, Jasmine Portmann, Nico Joel Halwe, Lorenz Ulrich, Bettina Salome Trüeb, Jenna N. Kelly, Xiaoyu Fan, Bernd Hoffmann, Silvio Steiner, Li Wang, Lisa Thomann, Xudong Lin, Hanspeter Stalder, Berta Pozzi, Simone de Brot, Nannan Jiang, Dan Cui, Jaber Hossain, Malania Wilson, Matthew Keller, Thomas J. Stark, John R. Barnes, Ronald Dijkman, Joerg Jores, Charaf Benarafa, David E. Wentworth, Volker Thiel, Martin Beer
bioRxiv 2020.10.27.357558; doi: https://doi.org/10.1101/2020.10.27.357558
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SARS-CoV-2 spike D614G variant confers enhanced replication and transmissibility
Bin Zhou, Tran Thi Nhu Thao, Donata Hoffmann, Adriano Taddeo, Nadine Ebert, Fabien Labroussaa, Anne Pohlmann, Jacqueline King, Jasmine Portmann, Nico Joel Halwe, Lorenz Ulrich, Bettina Salome Trüeb, Jenna N. Kelly, Xiaoyu Fan, Bernd Hoffmann, Silvio Steiner, Li Wang, Lisa Thomann, Xudong Lin, Hanspeter Stalder, Berta Pozzi, Simone de Brot, Nannan Jiang, Dan Cui, Jaber Hossain, Malania Wilson, Matthew Keller, Thomas J. Stark, John R. Barnes, Ronald Dijkman, Joerg Jores, Charaf Benarafa, David E. Wentworth, Volker Thiel, Martin Beer
bioRxiv 2020.10.27.357558; doi: https://doi.org/10.1101/2020.10.27.357558

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