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Metabarcoding faecal samples to investigate spatiotemporal variation in the diet of the endangered Westland petrel (Procellaria westlandica)

View ORCID ProfileMarina Querejeta, View ORCID ProfileMarie-Caroline Lefort, View ORCID ProfileVincent Bretagnolle, View ORCID ProfileStéphane Boyer
doi: https://doi.org/10.1101/2020.10.30.360289
Marina Querejeta
1Institut de Recherche sur la Biologie de l’Insecte, UMR 7261, CNRS-Université de Tours, Tours, France
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Marie-Caroline Lefort
2Environmental and Animal Sciences, Unitec Institute of Technology, 139 Carrington Road, Mt Albert, Auckland 1025, New Zealand
3Cellule de Valorisation Pédagogique, Université de Tours, 60 rue du Plat d’Étain, 37000 Tours, France
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Vincent Bretagnolle
4Centre d’Études Biologiques de Chizé, UMR 7372, CNRS & La Rochelle Université, 79360 Villiers en Bois, France
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Stéphane Boyer
1Institut de Recherche sur la Biologie de l’Insecte, UMR 7261, CNRS-Université de Tours, Tours, France
2Environmental and Animal Sciences, Unitec Institute of Technology, 139 Carrington Road, Mt Albert, Auckland 1025, New Zealand
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  • For correspondence: stephane.boyer@univ-tours.fr
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ABSTRACT

As top predators, seabirds can be indirectly impacted by climate variability and commercial fishing activities through changes in marine communities. However, high mobility and foraging behaviour enables seabirds to exploit prey distributed patchily in time and space. This capacity to adapt to environmental change can be described through the study of their diet. Traditionally, the diet of seabirds is assessed through the morphological identification of prey remains in regurgitates. This sampling method is invasive for the bird and limited in terms of taxonomic resolution. However, the recent progress in DNA-based approaches is now providing a non-invasive means to more comprehensively and accurately characterize animal diets. Here, we used a non-invasive metabarcoding approach to characterize the diet of the Westland petrel (Procellaria westlandica), which is an endangered burrowing species, endemic to the South Island of New Zealand. We collected 99 fresh faecal samples at two different seasons and in two different sub-colonies. Our aims were to describe the diet of the Westland petrel, investigate seasonal and spatial variation in the petrels’ diet, and assess potential impacts of the New Zealand fishery industry. We found that amphipods were the most common prey, followed by cephalopods and fish. Our results could be the result of natural foraging behaviour, but also suggest a close link between the composition of prey items and New Zealand’s commercial fishing activities. In particular, the high abundance of amphipods could be the result of Westland petrels feeding on discarded fisheries waste (fish guts). Our results also showed significant differences in diet between seasons (before hatching vs chick-rearing season) and between sampling sites (two sub-colonies 1.5 km apart), indicating plasticity in the foraging strategy of the Westland petrel. Due to its non-invasive nature, metabarcoding of faecal samples can be applied to large numbers of samples to help describe dietary variation in seabirds and indicate their ecological requirements. In our example, dietary DNA (dDNA) provided valuable information regarding the dietary preferences of an iconic species in New Zealand’s unique biodiversity. dDNA can thus inform the conservation of endangered or at-risk species that have elusive foraging behaviours.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • This is the final and edited version of the manuscript recommended by Peer Community In Ecology (https://doi.org/10.24072/pci.ecology.100090)

  • https://figshare.com/s/9c6d1292b51d35daf422

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted December 01, 2021.
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Metabarcoding faecal samples to investigate spatiotemporal variation in the diet of the endangered Westland petrel (Procellaria westlandica)
Marina Querejeta, Marie-Caroline Lefort, Vincent Bretagnolle, Stéphane Boyer
bioRxiv 2020.10.30.360289; doi: https://doi.org/10.1101/2020.10.30.360289
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Metabarcoding faecal samples to investigate spatiotemporal variation in the diet of the endangered Westland petrel (Procellaria westlandica)
Marina Querejeta, Marie-Caroline Lefort, Vincent Bretagnolle, Stéphane Boyer
bioRxiv 2020.10.30.360289; doi: https://doi.org/10.1101/2020.10.30.360289

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