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Cave Thiovulaceae differ metabolically and genomically from marine species

View ORCID ProfileMina Bizic, View ORCID ProfileTraian Brad, View ORCID ProfileDanny Ionescu, View ORCID ProfileLucian Barbu-Tudoran, Joost Aerts, Radu Popa, View ORCID ProfileLuca Zoccarato, Jessica Ody, View ORCID ProfileJean-François Flot, View ORCID ProfileScott Tighe, Daniel Vellone, View ORCID ProfileSerban M. Sarbu
doi: https://doi.org/10.1101/2020.11.04.367730
Mina Bizic
1Leibniz Institute for Freshwater Ecology and Inland Fisheries, IGB, Dep 3, Experimental Limnology, Zur Alte Fischerhütte 2, OT Neuglobsow, 16775 Stechlin, Germany
2Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
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  • For correspondence: mina.bizic@igb-berlin.de traian.brad@academia-cj.ro
Traian Brad
3“Emil Racoviţă” Institute of Speleology, Clinicilor 5-7, 400006 Cluj-Napoca Romania
4Institutul Român de Ştiinţă şi Tehnologie, Virgil Fulicea nr. 3, 400022 Cluj-Napoca, Romania
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  • For correspondence: mina.bizic@igb-berlin.de traian.brad@academia-cj.ro
Danny Ionescu
1Leibniz Institute for Freshwater Ecology and Inland Fisheries, IGB, Dep 3, Experimental Limnology, Zur Alte Fischerhütte 2, OT Neuglobsow, 16775 Stechlin, Germany
2Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
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Lucian Barbu-Tudoran
5Center for Electron Microscopy, “Babeş-Bolyai” University, Clinicilor 5, 400006 Cluj-Napoca, Romania
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Joost Aerts
6Department of Molecular Cell Physiology, Faculty of Earth and Life sciences, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands
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Radu Popa
7River Road Research, 62 Leslie St. Buffalo, NY 1421, USA
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Luca Zoccarato
1Leibniz Institute for Freshwater Ecology and Inland Fisheries, IGB, Dep 3, Experimental Limnology, Zur Alte Fischerhütte 2, OT Neuglobsow, 16775 Stechlin, Germany
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Jessica Ody
8Evolutionary Biology and Ecology, Université libre de Bruxelles (ULB), C.P. 160/12, Avenue F.D. Roosevelt 50, 1050 Brussels, Belgium
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Jean-François Flot
8Evolutionary Biology and Ecology, Université libre de Bruxelles (ULB), C.P. 160/12, Avenue F.D. Roosevelt 50, 1050 Brussels, Belgium
92, Brussels, Belgium
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Scott Tighe
10Vermont Integrative Genomics Lab, University of Vermont Cancer Center, Health Science Research Facility, Burlington, Vermont, 05405, USA
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Daniel Vellone
10Vermont Integrative Genomics Lab, University of Vermont Cancer Center, Health Science Research Facility, Burlington, Vermont, 05405, USA
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Serban M. Sarbu
11“Emil Racoviţă” Institute of Speleology, Frumoasa 31-B, 010986 Bucureşti, Romania
12Department of Biological Sciences, California State University, Chico 95929, USA
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ABSTRACT

Life in Movile Cave (Romania) relies entirely on carbon fixation by bacteria. The microbial community in the surface water of Movile Cave’s hypoxic air bells is dominated by large spherical-ovoid bacteria we identified as Thiovulum sp. (Campylobacterota). These form a separate phylogenetic cluster within the Thiovulaceae, consisting mostly of freshwater cave bacteria. We compared the closed genome of this Thiovulum to that of the marine strain Thiovulum ES, and to a genome we assembled from public data from the sulfidic Frasassi caves. The Movile and Frasassi Thiovulum were very similar, differing greatly from the marine strain. Based on their genomes, cave Thiovulum can switch between aerobic and anaerobic sulfide oxidation using O2 and NO3- as electron acceptors, respectively. NO3-, is likely reduced to NH3 via dissimilatory nitrate reduction to ammonia using periplasmic nitrate reductase (Nap) and hydroxylamine oxidoreductase. Thus, Thiovulum, is likely important to both S and N cycles in sulfidic subterranean aquatic ecosystems. Additionally, we suggest that the short peritrichous flagella-like structures typical of Thiovulum are type IV pili, for which genes were found in all Thiovulum genomes. These pili may play a role in veil formation, connecting adjacent cells and the exceptionally fast swimming of these bacteria.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted January 12, 2022.
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Cave Thiovulaceae differ metabolically and genomically from marine species
Mina Bizic, Traian Brad, Danny Ionescu, Lucian Barbu-Tudoran, Joost Aerts, Radu Popa, Luca Zoccarato, Jessica Ody, Jean-François Flot, Scott Tighe, Daniel Vellone, Serban M. Sarbu
bioRxiv 2020.11.04.367730; doi: https://doi.org/10.1101/2020.11.04.367730
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Cave Thiovulaceae differ metabolically and genomically from marine species
Mina Bizic, Traian Brad, Danny Ionescu, Lucian Barbu-Tudoran, Joost Aerts, Radu Popa, Luca Zoccarato, Jessica Ody, Jean-François Flot, Scott Tighe, Daniel Vellone, Serban M. Sarbu
bioRxiv 2020.11.04.367730; doi: https://doi.org/10.1101/2020.11.04.367730

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